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Packagehl7.fhir.uv.genomics-reporting
Resource TypeValueSet
IdValueSet-molecular-biomarker-code-vs.json
FHIR VersionR4
Sourcehttps://build.fhir.org/ig/HL7/genomics-reporting/ValueSet-molecular-biomarker-code-vs.html
URLhttp://hl7.org/fhir/uv/genomics-reporting/ValueSet/molecular-biomarker-code-vs
Version4.0.0-cibuild
Statusactive
Date2026-01-30T18:21:39+00:00
NameMolecularBiomarkerCodeVS
TitleMolecular Biomarker Codes
Realmuv
Authorityhl7
DescriptionValue Set for terms that can be used as Biomarkers.
CopyrightThis material contains content from LOINC (http://loinc.org). LOINC is copyright © 1995-2020, Regenstrief Institute, Inc. and the Logical Observation Identifiers Names and Codes (LOINC) Committee and is available at no cost under the license at http://loinc.org/license. LOINC® is a registered United States trademark of Regenstrief Institute, Inc. This value set includes content from SNOMED CT, which is copyright © 2002+ International Health Terminology Standards Development Organisation (IHTSDO), and distributed by agreement between IHTSDO and HL7. Implementer use of SNOMED CT is not covered by this agreement.

Resources that use this resource

StructureDefinition
molecular-biomarkerMolecular Biomarker

Resources that this resource uses

CodeSystem
loinc.orgLOINC codes used in this IG
Thesaurus.owlNCI Thesaurus

Narrative

Note: links and images are rebased to the (stated) source

Generated Narrative: ValueSet molecular-biomarker-code-vs

This value set includes codes based on the following rules:

  • Include these codes as defined in http://loinc.org version Not Stated (use latest from terminology server)
    CodeDisplay
    85337-4Estrogen receptor Ag [Presence] in Breast cancer specimen by Immune stain
    72382-5HER2 [Units/volume] in Tissue by Immunoassay
    77637-7HLA-A and B and C (class I) IgG panel [Identifier] - Serum or Plasma by Immunoassay
    40557-1Progesterone receptor Ag [Presence] in Tissue by Immune stain
    85147-7PD-L1 by clone 22C3 in Tissue by Immune stain Report
    59025-7Neutrophil Ab [Units/volume] in Serum by Flow cytometry (FC)
    59003-4Lactoferrin Ab [Units/volume] in Serum by Immunoassay
    10495-0Insulin Ag [Presence] in Tissue by Immune stain
    16550-6Carbohydrates [Identifier] in Urine
    2569-2Lipids [Mass/volume] in Serum
    4551-8Hemoglobin A2/Hemoglobin.total in Blood
    19195-7Prostate specific Ag [Units/volume] in Serum or Plasma
    64083-9MGMT gene methylation score in Tissue by Molecular genetics method
    62862-8Microsatellite instability [Presence] in Tissue by Immune stain
    81704-9Microsatellite instability marker D17S250 in Cancer specimen Qualitative
    94077-5Tumor mutation burden [Interpretation]
  • Include these codes as defined in http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl version ∅
    CodeDisplay
    C120465Homologous Recombination Repair Deficiency

Source1

{
  "resourceType": "ValueSet",
  "id": "molecular-biomarker-code-vs",
  "text": {
    "status": "generated",
    "div": "<!-- snip (see above) -->"
  },
  "extension": [
    {
      "url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg",
      "valueCode": "cg"
    },
    {
      "url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fmm",
      "valueInteger": 2,
      "_valueInteger": {
        "extension": [
          {
            "url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom",
            "valueCanonical": "http://hl7.org/fhir/uv/genomics-reporting/ImplementationGuide/genomics-reporting"
          }
        ]
      }
    },
    {
      "url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-standards-status",
      "valueCode": "trial-use",
      "_valueCode": {
        "extension": [
          {
            "url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom",
            "valueCanonical": "http://hl7.org/fhir/uv/genomics-reporting/ImplementationGuide/genomics-reporting"
          }
        ]
      }
    }
  ],
  "url": "http://hl7.org/fhir/uv/genomics-reporting/ValueSet/molecular-biomarker-code-vs",
  "version": "4.0.0-cibuild",
  "name": "MolecularBiomarkerCodeVS",
  "title": "Molecular Biomarker Codes",
  "status": "active",
  "experimental": false,
  "date": "2026-01-30T18:21:39+00:00",
  "publisher": "HL7 International / Clinical Genomics",
  "contact": [
    {
      "name": "HL7 International / Clinical Genomics",
      "telecom": [
        {
          "system": "url",
          "value": "http://www.hl7.org/Special/committees/clingenomics"
        },
        {
          "system": "email",
          "value": "cg@lists.HL7.org"
        }
      ]
    }
  ],
  "description": "Value Set for terms that can be used as Biomarkers.",
  "jurisdiction": [
    {
      "coding": [
        {
          "system": "http://unstats.un.org/unsd/methods/m49/m49.htm",
          "code": "001",
          "display": "World"
        }
      ]
    }
  ],
  "copyright": "This material contains content from LOINC (http://loinc.org). LOINC is copyright © 1995-2020, Regenstrief Institute, Inc. and the Logical Observation Identifiers Names and Codes (LOINC) Committee and is available at no cost under the license at http://loinc.org/license. LOINC® is a registered United States trademark of Regenstrief Institute, Inc.\nThis value set includes content from SNOMED CT, which is copyright © 2002+ International Health Terminology Standards Development Organisation (IHTSDO), and distributed by agreement between IHTSDO and HL7. Implementer use of SNOMED CT is not covered by this agreement.",
  "compose": {
    "include": [
      {
        "system": "http://loinc.org",
        "concept": [
          {
            "code": "85337-4",
            "display": "Estrogen receptor Ag [Presence] in Breast cancer specimen by Immune stain"
          },
          {
            "code": "72382-5",
            "display": "HER2 [Units/volume] in Tissue by Immunoassay"
          },
          {
            "code": "77637-7",
            "display": "HLA-A and B and C (class I) IgG panel [Identifier] - Serum or Plasma by Immunoassay"
          },
          {
            "code": "40557-1",
            "display": "Progesterone receptor Ag [Presence] in Tissue by Immune stain"
          },
          {
            "code": "85147-7",
            "display": "PD-L1 by clone 22C3 in Tissue by Immune stain Report"
          },
          {
            "code": "59025-7",
            "display": "Neutrophil Ab [Units/volume] in Serum by Flow cytometry (FC)"
          },
          {
            "code": "59003-4",
            "display": "Lactoferrin Ab [Units/volume] in Serum by Immunoassay"
          },
          {
            "code": "10495-0",
            "display": "Insulin Ag [Presence] in Tissue by Immune stain"
          },
          {
            "code": "16550-6",
            "display": "Carbohydrates [Identifier] in Urine"
          },
          {
            "code": "2569-2",
            "display": "Lipids [Mass/volume] in Serum"
          },
          {
            "code": "4551-8",
            "display": "Hemoglobin A2/Hemoglobin.total in Blood"
          },
          {
            "code": "19195-7",
            "display": "Prostate specific Ag [Units/volume] in Serum or Plasma"
          },
          {
            "code": "64083-9",
            "display": "MGMT gene methylation score in Tissue by Molecular genetics method"
          },
          {
            "code": "62862-8",
            "display": "Microsatellite instability [Presence] in Tissue by Immune stain"
          },
          {
            "code": "81704-9",
            "display": "Microsatellite instability marker D17S250 in Cancer specimen Qualitative"
          },
          {
            "code": "94077-5",
            "display": "Tumor mutation burden [Interpretation]"
          }
        ]
      },
      {
        "system": "http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl",
        "concept": [
          {
            "code": "C120465",
            "display": "Homologous Recombination Repair Deficiency"
          }
        ]
      }
    ]
  }
}