FHIRsmith: RiskAssessment/RiskAssessment-GenRiskDiabetesT2.json

FHIR IG analytics

Package	hl7.fhir.uv.genomics-reporting
Resource Type	RiskAssessment
Id	RiskAssessment-GenRiskDiabetesT2.json
FHIR Version	R4

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Resources that this resource uses

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Narrative

Note: links and images are rebased to the (stated) source

Generated Narrative: RiskAssessment GenRiskDiabetesT2

parent: Observation Diagnostic Implication

status: Final

subject: Adam B. Everyman Male, DoB: 1951-01-20 ( Medical Record Number: m123 (use: usual, ))

basis:

Variant 1 (Identifier: http://hospital.example.org/11)
Variant 2 (Identifier: http://hospital.example.org/12)
Variant 3 (Identifier: http://hospital.example.org/13)
Variant 4 (Identifier: http://hospital.example.org/14)
Variant 5 (Identifier: http://hospital.example.org/15)
Variant 6 (Identifier: http://hospital.example.org/16)
Variant 7 (Identifier: http://hospital.example.org/17)

prediction
outcome: Diabetes mellitus type 2 (disorder)
probability: 0.26
qualitativeRisk: Low likelihood
relativeRisk: 1.05
when: ?-53

prediction
outcome: Diabetes mellitus type 2 (disorder)
probability: 0.7
qualitativeRisk: High likelihood
relativeRisk: 2.69
when: ?-65

Source1

{
  "resourceType": "RiskAssessment",
  "id": "GenRiskDiabetesT2",
  "text": {
    "status": "generated",
    "div": "<!-- snip (see above) -->"
  },
  "parent": {
    "reference": "Observation/PolyGenicDiagnosticImpExample"
  },
  "status": "final",
  "subject": {
    "reference": "Patient/CGPatientExample01"
  },
  "basis": [
    {
      "identifier": {
        "system": "http://hospital.example.org",
        "value": "11"
      },
      "display": "Variant 1"
    },
    {
      "identifier": {
        "system": "http://hospital.example.org",
        "value": "12"
      },
      "display": "Variant 2"
    },
    {
      "identifier": {
        "system": "http://hospital.example.org",
        "value": "13"
      },
      "display": "Variant 3"
    },
    {
      "identifier": {
        "system": "http://hospital.example.org",
        "value": "14"
      },
      "display": "Variant 4"
    },
    {
      "identifier": {
        "system": "http://hospital.example.org",
        "value": "15"
      },
      "display": "Variant 5"
    },
    {
      "identifier": {
        "system": "http://hospital.example.org",
        "value": "16"
      },
      "display": "Variant 6"
    },
    {
      "identifier": {
        "system": "http://hospital.example.org",
        "value": "17"
      },
      "display": "Variant 7"
    }
  ],
  "prediction": [
    {
      "outcome": {
        "coding": [
          {
            "system": "http://snomed.info/sct",
            "code": "44054006",
            "display": "Diabetes mellitus type 2 (disorder)"
          }
        ]
      },
      "probabilityDecimal": 0.26,
      "qualitativeRisk": {
        "coding": [
          {
            "system": "http://terminology.hl7.org/CodeSystem/risk-probability",
            "code": "low",
            "display": "Low likelihood"
          }
        ]
      },
      "relativeRisk": 1.05,
      "whenRange": {
        "high": {
          "value": 53,
          "unit": "years",
          "system": "http://unitsofmeasure.org",
          "code": "a"
        }
      }
    },
    {
      "outcome": {
        "coding": [
          {
            "system": "http://snomed.info/sct",
            "code": "44054006",
            "display": "Diabetes mellitus type 2 (disorder)"
          }
        ]
      },
      "probabilityDecimal": 0.7,
      "qualitativeRisk": {
        "coding": [
          {
            "system": "http://terminology.hl7.org/CodeSystem/risk-probability",
            "code": "high",
            "display": "High likelihood"
          }
        ]
      },
      "relativeRisk": 2.69,
      "whenRange": {
        "high": {
          "value": 65,
          "unit": "years",
          "system": "http://unitsofmeasure.org",
          "code": "a"
        }
      }
    }
  ]
}