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FHIR IG Statistics: CodeSystem/variant-confidence-status-cs

Packagehl7.fhir.uv.genomics-reporting
Resource TypeCodeSystem
Idvariant-confidence-status-cs
FHIR VersionR4
Sourcehttp://hl7.org/fhir/uv/genomics-reporting/https://build.fhir.org/ig/HL7/genomics-reporting/CodeSystem-variant-confidence-status-cs.html
URLhttp://terminology.hl7.org/CodeSystem/variant-confidence-status-cs
Version4.0.0-ballot
Statusactive
Date2025-06-24T17:31:37+00:00
NameVariantConfidenceStatusCS
TitleVariant Confidence Status Codes
Realmuv
Authorityhl7
DescriptionA code that represents the confidence of a true positive variant call.
Contentcomplete

Resources that use this resource

ValueSet
variant-confidence-status-vsVariant Confidence Status

Resources that this resource uses

No resources found


Narrative

Note: links and images are rebased to the (stated) source

Generated Narrative: CodeSystem variant-confidence-status-cs

This case-sensitive code system http://terminology.hl7.org/CodeSystem/variant-confidence-status-cs defines the following codes:

CodeDisplayDefinition
high HighHigh confidence true positive variant call. Suitable for clinical reporting.
intermediate IntermediateCandidate true positive variant call. Unable to confirm without additional testing.
low LowHigh confidence false positive variant call.

Source

{
  "resourceType": "CodeSystem",
  "id": "variant-confidence-status-cs",
  "text": {
    "status": "generated",
    "div": "<!-- snip (see above) -->"
  },
  "extension": [
    {
      "url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg",
      "valueCode": "cg"
    },
    {
      "url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-standards-status",
      "valueCode": "informative",
      "_valueCode": {
        "extension": [
          {
            "url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom",
            "valueCanonical": "http://hl7.org/fhir/uv/genomics-reporting/ImplementationGuide/genomics-reporting"
          }
        ]
      }
    }
  ],
  "url": "http://terminology.hl7.org/CodeSystem/variant-confidence-status-cs",
  "version": "4.0.0-ballot",
  "name": "VariantConfidenceStatusCS",
  "title": "Variant Confidence Status Codes",
  "status": "active",
  "experimental": true,
  "date": "2025-06-24T17:31:37+00:00",
  "publisher": "HL7 International / Clinical Genomics",
  "contact": [
    {
      "name": "HL7 International / Clinical Genomics",
      "telecom": [
        {
          "system": "url",
          "value": "http://www.hl7.org/Special/committees/clingenomics"
        },
        {
          "system": "email",
          "value": "cg@lists.HL7.org"
        }
      ]
    }
  ],
  "description": "A code that represents the confidence of a true positive variant call.",
  "jurisdiction": [
    {
      "coding": [
        {
          "system": "http://unstats.un.org/unsd/methods/m49/m49.htm",
          "code": "001",
          "display": "World"
        }
      ]
    }
  ],
  "caseSensitive": true,
  "content": "complete",
  "count": 3,
  "concept": [
    {
      "code": "high",
      "display": "High",
      "definition": "High confidence true positive variant call. Suitable for clinical reporting."
    },
    {
      "code": "intermediate",
      "display": "Intermediate",
      "definition": "Candidate true positive variant call. Unable to confirm without additional testing."
    },
    {
      "code": "low",
      "display": "Low",
      "definition": "High confidence false positive variant call."
    }
  ]
}