Package | hl7.fhir.uv.genomics-reporting |
Resource Type | CodeSystem |
Id | variant-confidence-status-cs |
FHIR Version | R4 |
Source | http://hl7.org/fhir/uv/genomics-reporting/https://build.fhir.org/ig/HL7/genomics-reporting/CodeSystem-variant-confidence-status-cs.html |
URL | http://terminology.hl7.org/CodeSystem/variant-confidence-status-cs |
Version | 4.0.0-ballot |
Status | active |
Date | 2025-06-24T17:31:37+00:00 |
Name | VariantConfidenceStatusCS |
Title | Variant Confidence Status Codes |
Realm | uv |
Authority | hl7 |
Description | A code that represents the confidence of a true positive variant call. |
Content | complete |
ValueSet | |
variant-confidence-status-vs | Variant Confidence Status |
No resources found
Note: links and images are rebased to the (stated) source
Generated Narrative: CodeSystem variant-confidence-status-cs
This case-sensitive code system http://terminology.hl7.org/CodeSystem/variant-confidence-status-cs
defines the following codes:
{ "resourceType": "CodeSystem", "id": "variant-confidence-status-cs", "text": { "status": "generated", "div": "<!-- snip (see above) -->" }, "extension": [ { "url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg", "valueCode": "cg" }, { "url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-standards-status", "valueCode": "informative", "_valueCode": { "extension": [ { "url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom", "valueCanonical": "http://hl7.org/fhir/uv/genomics-reporting/ImplementationGuide/genomics-reporting" } ] } } ], "url": "http://terminology.hl7.org/CodeSystem/variant-confidence-status-cs", "version": "4.0.0-ballot", "name": "VariantConfidenceStatusCS", "title": "Variant Confidence Status Codes", "status": "active", "experimental": true, "date": "2025-06-24T17:31:37+00:00", "publisher": "HL7 International / Clinical Genomics", "contact": [ { "name": "HL7 International / Clinical Genomics", "telecom": [ { "system": "url", "value": "http://www.hl7.org/Special/committees/clingenomics" }, { "system": "email", "value": "cg@lists.HL7.org" } ] } ], "description": "A code that represents the confidence of a true positive variant call.", "jurisdiction": [ { "coding": [ { "system": "http://unstats.un.org/unsd/methods/m49/m49.htm", "code": "001", "display": "World" } ] } ], "caseSensitive": true, "content": "complete", "count": 3, "concept": [ { "code": "high", "display": "High", "definition": "High confidence true positive variant call. Suitable for clinical reporting." }, { "code": "intermediate", "display": "Intermediate", "definition": "Candidate true positive variant call. Unable to confirm without additional testing." }, { "code": "low", "display": "Low", "definition": "High confidence false positive variant call." } ] }