FHIR IG Statistics: CodeSystem/molecular-biomarker-ontology-cs

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{
  "resourceType": "CodeSystem",
  "id": "molecular-biomarker-ontology-cs",
  "text": {
    "status": "generated",
    "div": "<!-- snip (see above) -->"
  },
  "extension": [
    {
      "url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg",
      "valueCode": "cg"
    },
    {
      "url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-standards-status",
      "valueCode": "informative",
      "_valueCode": {
        "extension": [
          {
            "url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom",
            "valueCanonical": "http://hl7.org/fhir/uv/genomics-reporting/ImplementationGuide/genomics-reporting"
          }
        ]
      }
    }
  ],
  "url": "http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/molecular-biomarker-ontology-cs",
  "version": "4.0.0-ballot",
  "name": "MolecularBiomarkerOntologyCS",
  "title": "Molecular Biomarker Ontology Codes",
  "status": "active",
  "experimental": true,
  "date": "2025-06-24T17:31:37+00:00",
  "publisher": "HL7 International / Clinical Genomics",
  "contact": [
    {
      "name": "HL7 International / Clinical Genomics",
      "telecom": [
        {
          "system": "url",
          "value": "http://www.hl7.org/Special/committees/clingenomics"
        },
        {
          "system": "email",
          "value": "cg@lists.HL7.org"
        }
      ]
    }
  ],
  "description": "This (experimental) code system provides for a draft categorization of biomarkers along several axes. Based on ballot feedback, the committee anticipates significant revisions.",
  "jurisdiction": [
    {
      "coding": [
        {
          "system": "http://unstats.un.org/unsd/methods/m49/m49.htm",
          "code": "001",
          "display": "World"
        }
      ]
    }
  ],
  "caseSensitive": true,
  "hierarchyMeaning": "is-a",
  "content": "complete",
  "count": 17,
  "concept": [
    {
      "code": "_physiologyBiomarkerCategory",
      "display": "Molecular biomarker physiologic role category",
      "definition": "A category based on the normal bodily function of the biomarker.",
      "concept": [
        {
          "code": "antibody",
          "display": "antibody category",
          "definition": "Molecular biomarker physiologic role is an antibody."
        },
        {
          "code": "antgen",
          "display": "antigen category",
          "definition": "Molecular biomarker physiologic role is an antigen."
        },
        {
          "code": "cellReceptor",
          "display": "cell receptor category",
          "definition": "Molecular biomarker physiologic role is a cell receptor."
        },
        {
          "code": "cellReceptorLigand",
          "display": "cell receptor ligand category",
          "definition": "Molecular biomarker physiologic role is a cell receptor ligand."
        }
      ]
    },
    {
      "code": "_moleculeTypeBiomarkerCategory",
      "display": "Molecular biomarker molecular type category",
      "definition": "A category based on the type of biomarker molecule.",
      "concept": [
        {
          "code": "carbohydrate",
          "display": "carbohydrate category",
          "definition": "Molecular biomarker molecule type is a carbohydrate."
        },
        {
          "code": "lipid",
          "display": "lipid category",
          "definition": "Molecular biomarker molecule type is a lipid."
        },
        {
          "code": "nucleicAcid",
          "display": "nucleic acid category",
          "definition": "Molecular biomarker molecule type is a nucleic acid."
        },
        {
          "code": "protein",
          "display": "protein category",
          "definition": "Molecular biomarker molecule type is a protein. Includes single or multi-subunit proteins with or without post-translational modifications."
        }
      ]
    },
    {
      "code": "_methodBiomarkerCategory",
      "display": "Molecular biomarker method type category",
      "definition": "A category based on the measurement ascertainment method of the biomarker. (Methods are drawn from LOINC (https://loinc.org/kb/users-guide/major-parts-of-a-loinc-term/#type-of-method-6th-part) and NCBI Genetic Testing Registry (https://www.ncbi.nlm.nih.gov/gtr/)).",
      "concept": [
        {
          "code": "enzymeAssay",
          "display": "enzyme assay category",
          "definition": "Molecular biomarker method is enzyme assay."
        },
        {
          "code": "flowCytometry",
          "display": "flow cytometry category",
          "definition": "Molecular biomarker method is flow cytometry."
        },
        {
          "code": "immuneStain",
          "display": "immune stain category",
          "definition": "Molecular biomarker method is immune stain."
        },
        {
          "code": "immunoassay",
          "display": "immunoassay category",
          "definition": "Molecular biomarker method is immunoassay."
        },
        {
          "code": "methylationAnalysis",
          "display": "methylation analysis category",
          "definition": "Molecular biomarker method is methylation analysis."
        },
        {
          "code": "molgen",
          "display": "molecular sequence adjacent category",
          "definition": "Molecular biomarker method is molecular sequence adjacent observation."
        }
      ]
    }
  ]
}