| Package | hl7.fhir.uv.genomics-reporting |
| Resource Type | CodeSystem |
| Id | genomic-study-method-type-cs |
| FHIR Version | R4 |
| Source | http://hl7.org/fhir/uv/genomics-reporting/https://build.fhir.org/ig/HL7/genomics-reporting/CodeSystem-genomic-study-method-type-cs.html |
| URL | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs |
| Version | 4.0.0-ballot |
| Status | active |
| Date | 2025-06-24T17:31:37+00:00 |
| Name | GenomicStudyMethodTypeCS |
| Title | Genomic Study Method Type CodeSystem |
| Realm | uv |
| Authority | hl7 |
| Description | Backport of http://hl7.org/fhir/genomicstudy-methodtype |
| Content | complete |
| ValueSet | |
| genomic-study-method-type-vs | Genomic Study Method Type ValueSet |
| mii-vs-mtb-genomic-analysis-method-type | MII VS Genomic Analysis Method Type |
No resources found
Note: links and images are rebased to the (stated) source
Generated Narrative: CodeSystem genomic-study-method-type-cs
This case-sensitive code system http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs defines the following codes:
FHIR{
"resourceType": "CodeSystem",
"id": "genomic-study-method-type-cs",
"text": {
"status": "generated",
"div": "<!-- snip (see above) -->"
},
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg",
"valueCode": "cg"
},
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-standards-status",
"valueCode": "informative",
"_valueCode": {
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom",
"valueCanonical": "http://hl7.org/fhir/uv/genomics-reporting/ImplementationGuide/genomics-reporting"
}
]
}
}
],
"url": "http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-method-type-cs",
"version": "4.0.0-ballot",
"name": "GenomicStudyMethodTypeCS",
"title": "Genomic Study Method Type CodeSystem",
"status": "active",
"experimental": true,
"date": "2025-06-24T17:31:37+00:00",
"publisher": "HL7 International / Clinical Genomics",
"contact": [
{
"name": "HL7 International / Clinical Genomics",
"telecom": [
{
"system": "url",
"value": "http://www.hl7.org/Special/committees/clingenomics"
},
{
"system": "email",
"value": "cg@lists.HL7.org"
}
]
}
],
"description": "Backport of http://hl7.org/fhir/genomicstudy-methodtype",
"jurisdiction": [
{
"coding": [
{
"system": "http://unstats.un.org/unsd/methods/m49/m49.htm",
"code": "001",
"display": "World"
}
]
}
],
"caseSensitive": true,
"content": "complete",
"count": 81,
"concept": [
{
"code": "biochemical-genetics",
"display": "Biochemical Genetics",
"definition": "Biochemical Genetics"
},
{
"code": "cytogenetics",
"display": "Cytogenetics",
"definition": "Cytogenetics"
},
{
"code": "molecular-genetics",
"display": "Molecular Genetics",
"definition": "Molecular Genetics"
},
{
"code": "analyte",
"display": "Analyte",
"definition": "Analyte"
},
{
"code": "chromosome-breakage-studies",
"display": "Chromosome breakage studies",
"definition": "Chromosome breakage studies"
},
{
"code": "deletion-duplication-analysis",
"display": "Deletion/duplication analysis",
"definition": "Deletion/duplication analysis"
},
{
"code": "detection-of-homozygosity",
"display": "Detection of homozygosity",
"definition": "Detection of homozygosity"
},
{
"code": "enzyme-assay",
"display": "Enzyme assay",
"definition": "Enzyme assay"
},
{
"code": "fish-interphase",
"display": "FISH-interphase",
"definition": "FISH-interphase"
},
{
"code": "fish-metaphase",
"display": "FISH-metaphase",
"definition": "FISH-metaphase"
},
{
"code": "flow-cytometry",
"display": "Flow cytometry",
"definition": "Flow cytometry"
},
{
"code": "fish",
"display": "Fluorescence in situ hybridization (FISH)",
"definition": "Fluorescence in situ hybridization (FISH)"
},
{
"code": "immunohistochemistry",
"display": "Immunohistochemistry",
"definition": "Immunohistochemistry"
},
{
"code": "karyotyping",
"display": "Karyotyping",
"definition": "Karyotyping"
},
{
"code": "linkage-analysis",
"display": "Linkage analysis",
"definition": "Linkage analysis"
},
{
"code": "methylation-analysis",
"display": "Methylation analysis",
"definition": "Methylation analysis"
},
{
"code": "msi",
"display": "Microsatellite instability testing (MSI)",
"definition": "Microsatellite instability testing (MSI)"
},
{
"code": "m-fish",
"display": "Multicolor FISH (M-FISH)",
"definition": "Multicolor FISH (M-FISH)"
},
{
"code": "mutation-scanning-of-select-exons",
"display": "Mutation scanning of select exons",
"definition": "Mutation scanning of select exons"
},
{
"code": "mutation-scanning-of-the-entire-coding-region",
"display": "Mutation scanning of the entire coding region",
"definition": "Mutation scanning of the entire coding region"
},
{
"code": "protein-analysis",
"display": "Protein analysis",
"definition": "Protein analysis"
},
{
"code": "protein-expression",
"display": "Protein expression",
"definition": "Protein expression"
},
{
"code": "rna-analysis",
"display": "RNA analysis",
"definition": "RNA analysis"
},
{
"code": "sequence-analysis-of-select-exons",
"display": "Sequence analysis of select exons",
"definition": "Sequence analysis of select exons"
},
{
"code": "sequence-analysis-of-the-entire-coding-region",
"display": "Sequence analysis of the entire coding region",
"definition": "Sequence analysis of the entire coding region"
},
{
"code": "sister-chromatid-exchange",
"display": "Sister chromatid exchange",
"definition": "Sister chromatid exchange"
},
{
"code": "targeted-variant-analysis",
"display": "Targeted variant analysis",
"definition": "Targeted variant analysis"
},
{
"code": "udp",
"display": "Uniparental disomy study (UPD)",
"definition": "Uniparental disomy study (UPD)"
},
{
"code": "aspe",
"display": "Allele-specific primer extension (ASPE)",
"definition": "Allele-specific primer extension (ASPE)"
},
{
"code": "alternative-splicing-detection",
"display": "Alternative splicing detection",
"definition": "Alternative splicing detection"
},
{
"code": "bi-directional-sanger-sequence-analysis",
"display": "Bi-directional Sanger Sequence Analysis",
"definition": "Bi-directional Sanger Sequence Analysis"
},
{
"code": "c-banding",
"display": "C-banding",
"definition": "C-banding"
},
{
"code": "cia",
"display": "Chemiluminescent Immunoassay (CIA)",
"definition": "Chemiluminescent Immunoassay (CIA)"
},
{
"code": "chromatin-immunoprecipitation-on-chip",
"display": "Chromatin Immunoprecipitation on ChIP",
"definition": "Chromatin Immunoprecipitation on ChIP"
},
{
"code": "comparative-genomic-hybridization",
"display": "Comparative Genomic Hybridization",
"definition": "Comparative Genomic Hybridization"
},
{
"code": "damid",
"display": "DamID",
"definition": "DamID"
},
{
"code": "digital-virtual-karyotyping",
"display": "Digital / Virtual karyotyping",
"definition": "Digital / Virtual karyotyping"
},
{
"code": "digital-microfluidic-microspheres",
"display": "Digital microfluidic microspheres",
"definition": "Digital microfluidic microspheres"
},
{
"code": "enzymatic-levels",
"display": "Enzymatic levels",
"definition": "Enzymatic levels"
},
{
"code": "enzyme-activity",
"display": "Enzyme activity",
"definition": "Enzyme activity"
},
{
"code": "elisa",
"display": "Enzyme-Linked Immunosorbent Assays (ELISA)",
"definition": "Enzyme-Linked Immunosorbent Assays (ELISA)"
},
{
"code": "fluorometry",
"display": "Fluorometry",
"definition": "Fluorometry"
},
{
"code": "fusion-genes-microarrays",
"display": "Fusion genes microarrays",
"definition": "Fusion genes microarrays"
},
{
"code": "g-banding",
"display": "G-banding",
"definition": "G-banding"
},
{
"code": "gc-ms",
"display": "Gas chromatographymass spectrometry (GC-MS)",
"definition": "Gas chromatographymass spectrometry (GC-MS)"
},
{
"code": "gene-expression-profiling",
"display": "Gene expression profiling",
"definition": "Gene expression profiling"
},
{
"code": "gene-id",
"display": "GeneID",
"definition": "GeneID"
},
{
"code": "gold-nanoparticle-probe-technology",
"display": "Gold nanoparticle probe technology",
"definition": "Gold nanoparticle probe technology"
},
{
"code": "hplc",
"display": "High-performance liquid chromatography (HPLC)",
"definition": "High-performance liquid chromatography (HPLC)"
},
{
"code": "lc-ms",
"display": "Liquid chromatography mass spectrometry (LC-MS)",
"definition": "Liquid chromatography mass spectrometry (LC-MS)"
},
{
"code": "lc-ms-ms",
"display": "Liquid chromatography-tandem mass spectrometry (LC-MS/MS)",
"definition": "Liquid chromatography-tandem mass spectrometry (LC-MS/MS)"
},
{
"code": "metabolite-levels",
"display": "Metabolite levels",
"definition": "Metabolite levels"
},
{
"code": "methylation-specific-pcr",
"display": "Methylation-specific PCR",
"definition": "Methylation-specific PCR"
},
{
"code": "microarray",
"display": "Microarray",
"definition": "Microarray"
},
{
"code": "mlpa",
"display": "Multiplex Ligation-dependent Probe Amplification (MLPA)",
"definition": "Multiplex Ligation-dependent Probe Amplification (MLPA)"
},
{
"code": "ngs-mps",
"display": "Next-Generation (NGS)/Massively parallel sequencing (MPS)",
"definition": "Next-Generation (NGS)/Massively parallel sequencing (MPS)"
},
{
"code": "ola",
"display": "Oligonucleotide Ligation Assay (OLA)",
"definition": "Oligonucleotide Ligation Assay (OLA)"
},
{
"code": "oligonucleotide-hybridization-based-dna-sequencing",
"display": "Oligonucleotide hybridization-based DNA sequencing",
"definition": "Oligonucleotide hybridization-based DNA sequencing"
},
{
"code": "other",
"display": "Other",
"definition": "Other"
},
{
"code": "pcr",
"display": "PCR",
"definition": "PCR"
},
{
"code": "pcr-with-allele-specific-hybridization",
"display": "PCR with allele specific hybridization",
"definition": "PCR with allele specific hybridization"
},
{
"code": "pcr-rflp-with-southern-hybridization",
"display": "PCR-RFLP with Southern hybridization",
"definition": "PCR-RFLP with Southern hybridization"
},
{
"code": "protein-truncation-test",
"display": "Protein truncation test",
"definition": "Protein truncation test"
},
{
"code": "pyrosequencing",
"display": "Pyrosequencing",
"definition": "Pyrosequencing"
},
{
"code": "q-banding",
"display": "Q-banding",
"definition": "Q-banding"
},
{
"code": "qpcr",
"display": "Quantitative PCR (qPCR)",
"definition": "Quantitative PCR (qPCR)"
},
{
"code": "r-banding",
"display": "R-banding",
"definition": "R-banding"
},
{
"code": "rflp",
"display": "RFLP",
"definition": "RFLP"
},
{
"code": "rt-lamp",
"display": "RT-LAMP",
"definition": "RT-LAMP"
},
{
"code": "rt-pcr",
"display": "RT-PCR",
"definition": "RT-PCR"
},
{
"code": "rt-pcr-with-gel-analysis",
"display": "RT-PCR with gel analysis",
"definition": "RT-PCR with gel analysis"
},
{
"code": "rt-qpcr",
"display": "RT-qPCR",
"definition": "RT-qPCR"
},
{
"code": "snp-detection",
"display": "SNP Detection",
"definition": "SNP Detection"
},
{
"code": "silver-staining",
"display": "Silver staining",
"definition": "Silver staining"
},
{
"code": "sky",
"display": "Spectral karyotyping (SKY)",
"definition": "Spectral karyotyping (SKY)"
},
{
"code": "t-banding",
"display": "T-banding",
"definition": "T-banding"
},
{
"code": "ms-ms",
"display": "Tandem mass spectrometry (MS/MS)",
"definition": "Tandem mass spectrometry (MS/MS)"
},
{
"code": "tetra-nucleotide-repeat-by-pcr-or-southern-blot",
"display": "Tetra-nucleotide repeat by PCR or Southern Blot",
"definition": "Tetra-nucleotide repeat by PCR or Southern Blot"
},
{
"code": "tiling-arrays",
"display": "Tiling Arrays",
"definition": "Tiling Arrays"
},
{
"code": "trinucleotide-repeat-by-pcr-or-southern-blot",
"display": "Trinucleotide repeat by PCR or Southern Blot",
"definition": "Trinucleotide repeat by PCR or Southern Blot"
},
{
"code": "uni-directional-sanger-sequencing",
"display": "Uni-directional Sanger sequencing",
"definition": "Uni-directional Sanger sequencing"
}
]
}