FHIR IG Statistics: CodeSystem/genomic-study-data-format-cs

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Source

{
  "resourceType": "CodeSystem",
  "id": "genomic-study-data-format-cs",
  "text": {
    "status": "generated",
    "div": "<!-- snip (see above) -->"
  },
  "extension": [
    {
      "url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg",
      "valueCode": "cg"
    },
    {
      "url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-standards-status",
      "valueCode": "informative",
      "_valueCode": {
        "extension": [
          {
            "url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom",
            "valueCanonical": "http://hl7.org/fhir/uv/genomics-reporting/ImplementationGuide/genomics-reporting"
          }
        ]
      }
    }
  ],
  "url": "http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs",
  "version": "4.0.0-ballot",
  "name": "GenomicStudyDataFormatCS",
  "title": "Genomic Study Data Format CodeSystem",
  "status": "active",
  "experimental": true,
  "date": "2025-06-24T17:31:37+00:00",
  "publisher": "HL7 International / Clinical Genomics",
  "contact": [
    {
      "name": "HL7 International / Clinical Genomics",
      "telecom": [
        {
          "system": "url",
          "value": "http://www.hl7.org/Special/committees/clingenomics"
        },
        {
          "system": "email",
          "value": "cg@lists.HL7.org"
        }
      ]
    }
  ],
  "description": "Backport of http://hl7.org/fhir/genomicstudy-dataformat",
  "jurisdiction": [
    {
      "coding": [
        {
          "system": "http://unstats.un.org/unsd/methods/m49/m49.htm",
          "code": "001",
          "display": "World"
        }
      ]
    }
  ],
  "caseSensitive": true,
  "content": "complete",
  "count": 40,
  "concept": [
    {
      "code": "bam",
      "display": "BAM",
      "definition": "BAM"
    },
    {
      "code": "bed",
      "display": "BED",
      "definition": "BED"
    },
    {
      "code": "bedpe",
      "display": "BEDPE",
      "definition": "BEDPE"
    },
    {
      "code": "bedgraph",
      "display": "BedGraph",
      "definition": "BedGraph"
    },
    {
      "code": "bigbed",
      "display": "bigBed",
      "definition": "bigBed"
    },
    {
      "code": "bigWig",
      "display": "bigWig",
      "definition": "bigWig"
    },
    {
      "code": "birdsuite-files",
      "display": "Birdsuite-Files",
      "definition": "Birdsuite-Files"
    },
    {
      "code": "broadpeak",
      "display": "broadPeak",
      "definition": "broadPeak"
    },
    {
      "code": "cbs",
      "display": "CBS",
      "definition": "CBS"
    },
    {
      "code": "chemical-reactivity-probing-profiles",
      "display": "Chemical-Reactivity-Probing-Profiles",
      "definition": "Chemical-Reactivity-Probing-Profiles"
    },
    {
      "code": "chrom-sizes",
      "display": "chrom-sizes",
      "definition": "chrom-sizes"
    },
    {
      "code": "cn",
      "display": "CN",
      "definition": "CN"
    },
    {
      "code": "custom-file-formats",
      "display": "Custom-File-Formats",
      "definition": "Custom-File-Formats"
    },
    {
      "code": "cytoband",
      "display": "Cytoband",
      "definition": "Cytoband"
    },
    {
      "code": "fasta",
      "display": "FASTA",
      "definition": "FASTA"
    },
    {
      "code": "gct",
      "display": "GCT",
      "definition": "GCT"
    },
    {
      "code": "cram",
      "display": "CRAM",
      "definition": "CRAM"
    },
    {
      "code": "genepred",
      "display": "genePred",
      "definition": "genePred"
    },
    {
      "code": "gff-gtf",
      "display": "GFF/GTF",
      "definition": "GFF/GTF"
    },
    {
      "code": "gistic",
      "display": "GISTIC",
      "definition": "GISTIC"
    },
    {
      "code": "goby",
      "display": "Goby",
      "definition": "Goby"
    },
    {
      "code": "gwas",
      "display": "GWAS",
      "definition": "GWAS"
    },
    {
      "code": "igv",
      "display": "IGV",
      "definition": "IGV"
    },
    {
      "code": "loh",
      "display": "LOH",
      "definition": "LOH"
    },
    {
      "code": "maf-multiple-alignment-format",
      "display": "MAF-Multiple Alignment Format",
      "definition": "MAF-Multiple Alignment Format"
    },
    {
      "code": "maf-mutation-annotation-format",
      "display": "MAF-Mutation-Annotation-Format",
      "definition": "MAF-Mutation-Annotation-Format"
    },
    {
      "code": "merged-bam-file",
      "display": "Merged BAM File",
      "definition": "Merged BAM File"
    },
    {
      "code": "mut",
      "display": "MUT",
      "definition": "MUT"
    },
    {
      "code": "narrowpeak",
      "display": "narrowPeak",
      "definition": "narrowPeak"
    },
    {
      "code": "psl",
      "display": "PSL",
      "definition": "PSL"
    },
    {
      "code": "res",
      "display": "RES",
      "definition": "RES"
    },
    {
      "code": "rna-secondary-structure-formats",
      "display": "RNA-Secondary-Structure-Formats",
      "definition": "RNA-Secondary-Structure-Formats"
    },
    {
      "code": "sam",
      "display": "SAM",
      "definition": "SAM"
    },
    {
      "code": "sample-info-attributes-file",
      "display": "Sample-Info-Attributes-file",
      "definition": "Sample-Info-Attributes-file"
    },
    {
      "code": "seg",
      "display": "SEG",
      "definition": "SEG"
    },
    {
      "code": "tdf",
      "display": "TDF",
      "definition": "TDF"
    },
    {
      "code": "track-line",
      "display": "Track Line",
      "definition": "Track Line"
    },
    {
      "code": "type-line",
      "display": "Type Line",
      "definition": "Type Line"
    },
    {
      "code": "vcf",
      "display": "VCF",
      "definition": "VCF"
    },
    {
      "code": "wig",
      "display": "WIG",
      "definition": "WIG"
    }
  ]
}