Package | hl7.fhir.uv.genomics-reporting |
Type | CodeSystem |
Id | genomic-study-data-format-cs |
FHIR Version | R4 |
Source | http://hl7.org/fhir/uv/genomics-reporting/https://build.fhir.org/ig/HL7/genomics-reporting/CodeSystem-genomic-study-data-format-cs.html |
URL | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs |
Version | 4.0.0-ballot |
Status | active |
Date | 2025-06-24T17:31:37+00:00 |
Name | GenomicStudyDataFormatCS |
Title | Genomic Study Data Format CodeSystem |
Realm | uv |
Authority | hl7 |
Description | Backport of http://hl7.org/fhir/genomicstudy-dataformat |
Content | complete |
ValueSet | |
genomic-study-data-format-vs | Genomic Study Data Format ValueSet |
No resources found
Note: links and images are rebased to the (stated) source
Generated Narrative: CodeSystem genomic-study-data-format-cs
This case-sensitive code system http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs
defines the following codes:
{ "resourceType": "CodeSystem", "id": "genomic-study-data-format-cs", "text": { "status": "generated", "div": "<!-- snip (see above) -->" }, "extension": [ { "url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg", "valueCode": "cg" }, { "url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-standards-status", "valueCode": "informative", "_valueCode": { "extension": [ { "url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom", "valueCanonical": "http://hl7.org/fhir/uv/genomics-reporting/ImplementationGuide/genomics-reporting" } ] } } ], "url": "http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/genomic-study-data-format-cs", "version": "4.0.0-ballot", "name": "GenomicStudyDataFormatCS", "title": "Genomic Study Data Format CodeSystem", "status": "active", "experimental": true, "date": "2025-06-24T17:31:37+00:00", "publisher": "HL7 International / Clinical Genomics", "contact": [ { "name": "HL7 International / Clinical Genomics", "telecom": [ { "system": "url", "value": "http://www.hl7.org/Special/committees/clingenomics" }, { "system": "email", "value": "cg@lists.HL7.org" } ] } ], "description": "Backport of http://hl7.org/fhir/genomicstudy-dataformat", "jurisdiction": [ { "coding": [ { "system": "http://unstats.un.org/unsd/methods/m49/m49.htm", "code": "001", "display": "World" } ] } ], "caseSensitive": true, "content": "complete", "count": 40, "concept": [ { "code": "bam", "display": "BAM", "definition": "BAM" }, { "code": "bed", "display": "BED", "definition": "BED" }, { "code": "bedpe", "display": "BEDPE", "definition": "BEDPE" }, { "code": "bedgraph", "display": "BedGraph", "definition": "BedGraph" }, { "code": "bigbed", "display": "bigBed", "definition": "bigBed" }, { "code": "bigWig", "display": "bigWig", "definition": "bigWig" }, { "code": "birdsuite-files", "display": "Birdsuite-Files", "definition": "Birdsuite-Files" }, { "code": "broadpeak", "display": "broadPeak", "definition": "broadPeak" }, { "code": "cbs", "display": "CBS", "definition": "CBS" }, { "code": "chemical-reactivity-probing-profiles", "display": "Chemical-Reactivity-Probing-Profiles", "definition": "Chemical-Reactivity-Probing-Profiles" }, { "code": "chrom-sizes", "display": "chrom-sizes", "definition": "chrom-sizes" }, { "code": "cn", "display": "CN", "definition": "CN" }, { "code": "custom-file-formats", "display": "Custom-File-Formats", "definition": "Custom-File-Formats" }, { "code": "cytoband", "display": "Cytoband", "definition": "Cytoband" }, { "code": "fasta", "display": "FASTA", "definition": "FASTA" }, { "code": "gct", "display": "GCT", "definition": "GCT" }, { "code": "cram", "display": "CRAM", "definition": "CRAM" }, { "code": "genepred", "display": "genePred", "definition": "genePred" }, { "code": "gff-gtf", "display": "GFF/GTF", "definition": "GFF/GTF" }, { "code": "gistic", "display": "GISTIC", "definition": "GISTIC" }, { "code": "goby", "display": "Goby", "definition": "Goby" }, { "code": "gwas", "display": "GWAS", "definition": "GWAS" }, { "code": "igv", "display": "IGV", "definition": "IGV" }, { "code": "loh", "display": "LOH", "definition": "LOH" }, { "code": "maf-multiple-alignment-format", "display": "MAF-Multiple Alignment Format", "definition": "MAF-Multiple Alignment Format" }, { "code": "maf-mutation-annotation-format", "display": "MAF-Mutation-Annotation-Format", "definition": "MAF-Mutation-Annotation-Format" }, { "code": "merged-bam-file", "display": "Merged BAM File", "definition": "Merged BAM File" }, { "code": "mut", "display": "MUT", "definition": "MUT" }, { "code": "narrowpeak", "display": "narrowPeak", "definition": "narrowPeak" }, { "code": "psl", "display": "PSL", "definition": "PSL" }, { "code": "res", "display": "RES", "definition": "RES" }, { "code": "rna-secondary-structure-formats", "display": "RNA-Secondary-Structure-Formats", "definition": "RNA-Secondary-Structure-Formats" }, { "code": "sam", "display": "SAM", "definition": "SAM" }, { "code": "sample-info-attributes-file", "display": "Sample-Info-Attributes-file", "definition": "Sample-Info-Attributes-file" }, { "code": "seg", "display": "SEG", "definition": "SEG" }, { "code": "tdf", "display": "TDF", "definition": "TDF" }, { "code": "track-line", "display": "Track Line", "definition": "Track Line" }, { "code": "type-line", "display": "Type Line", "definition": "Type Line" }, { "code": "vcf", "display": "VCF", "definition": "VCF" }, { "code": "wig", "display": "WIG", "definition": "WIG" } ] }