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Packagehl7.fhir.uv.cg-incubator
Resource TypeMolecularDefinition
IdMolecularDefinition-example-variation-pgx-var-1021.json
FHIR VersionR6

Resources that use this resource

No resources found


Resources that this resource uses

No resources found


Narrative

Note: links and images are rebased to the (stated) source

Generated Narrative: MolecularDefinition example-variation-pgx-var-1021

Language: en

moleculeType: DNA sequence

location

sequenceLocation

sequenceContext: Starting Sequence Resource: Homo sapiens chromosome 10, GRCh37.p13 Primary Assembly, NC_000010.10

coordinateInterval

CoordinateSystems

-System
*1-based character counting

start: 96741053

end: 96741053

representation

focus: Reference State

Literals

-Value
*A

representation

focus: Alternative State

Literals

-Value
*A

Source1

{
  "resourceType": "MolecularDefinition",
  "resourceDefinition": "http://hl7.org/fhir/StructureDefinition/MolecularDefinition|0.1.0-ci-build",
  "id": "example-variation-pgx-var-1021",
  "language": "en",
  "text": {
    "status": "generated",
    "div": "<!-- snip (see above) -->"
  },
  "moleculeType": {
    "coding": [
      {
        "system": "http://hl7.org/fhir/uv/cg-incubator/CodeSystem/moleculardefinition-moleculetype",
        "code": "dna",
        "display": "DNA sequence"
      }
    ]
  },
  "location": [
    {
      "sequenceLocation": {
        "sequenceContext": {
          "reference": "MolecularDefinition/example-sequence-nc00001010-url",
          "type": "MolecularDefinition",
          "display": "Starting Sequence Resource: Homo sapiens chromosome 10, GRCh37.p13 Primary Assembly, NC_000010.10"
        },
        "coordinateInterval": {
          "coordinateSystem": {
            "system": {
              "coding": [
                {
                  "system": "http://loinc.org",
                  "code": "LA30102-0",
                  "display": "1-based character counting"
                }
              ],
              "text": "1-based character counting"
            }
          },
          "startQuantity": {
            "value": 96741053
          },
          "endQuantity": {
            "value": 96741053
          }
        }
      }
    }
  ],
  "representation": [
    {
      "focus": "reference-state",
      "literal": {
        "value": "A"
      }
    },
    {
      "focus": "alternative-state",
      "literal": {
        "value": "A"
      }
    }
  ]
}