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Narrative

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Source1

{
  "resourceType": "MolecularDefinition",
  "resourceDefinition": "http://hl7.org/fhir/StructureDefinition/MolecularDefinition|0.1.0-ci-build",
  "id": "example-sequence1",
  "language": "en",
  "text": {
    "status": "generated",
    "div": "<!-- snip (see above) -->"
  },
  "moleculeType": {
    "coding": [
      {
        "system": "http://hl7.org/fhir/uv/cg-incubator/CodeSystem/moleculardefinition-moleculetype",
        "code": "dna",
        "display": "DNA sequence"
      }
    ]
  },
  "representation": [
    {
      "literal": {
        "value": "ATGAACAGACAAGTAAAAGACATGACAGYGATACTTTCCCAGAGCTGAAGTTAACAAATGCACCTGGTTC TTTTACTAAGTGTTCAAATACCAGTGAACTTAAAGAATTTGTCAATCCTAGCCTTCCAAGAGAAGAAAAA GAAGAGAAACTAGAAACAGTTAAAGTGTCTAATAATGCTGAAGACCCCAAAGATCTCATGTTAAGTGGAG AAAGGGTTTTGCAAACTGAAAGATCTGTAGAGAGTAGCAGTATTTCAYTGGTACCTGGTACTGATTATGG CACTCAGGAAAGTATCTCGTTACTGGAAGTTAGCACTCTAGGGAAGGCAAAAACAGAACCAAATAAATGT GTGAGTCAGTGTGCAGCATTTGAAAACCCCAAGGGACTAATTCATGGTTGTTCCAAAGATAATAGAAATG ACACAGAAGGCTTTAAGTATCCATTGGGACATGAAGTTAACCACAGTCGGGAAACAAGCATAGAAATGGA AGAAAGTGAACTTGATGCTCAGTATTTGCAGAATACATTCAAGGTTTCAAAGCGCCAGTCATTTGCTCYG TTTTCAAATCCAGGAAATGCAGAAGAGGAATGTGCAACATTCTCTGCCCACTCTGGGTCCTTAAAGAAAC AAAGTCCAAAAGTCACTTTTGAATGTGAACAAAAGGAAGAAAATCAAGGAAAGAATGAGTCTAATATCAA GCCTGTACAGACAGTTAATATCACTGCAGGCTTTCCTGTGGTTGGTCAGAAAGA"
      },
      "resolvable": {
        "reference": "DocumentReference/example-genomicFile-mw7162561"
      },
      "extracted": {
        "startingMolecule": {
          "reference": "MolecularDefinition/example-starting-sequence-2b-extracted",
          "type": "MolecularDefinition",
          "display": "Starting Sequence Resource:                 ATGAACAGACAAGTAAAAGACATGACAGYGATACTTTCCCAGAGCTGAAGTTAACAAATGCACCTGGTTC                 TTTTACTAAGTGTTCAAATACCAGTGAACTTAAAGAATTTGTCAATCCTAGCCTTCCAAGAGAAGAAAAA                 GAAGAGAAACTAGAAACAGTTAAAGTGTCTAATAATGCTGAAGACCCCAAAGATCTCATGTTAAGTGGAG                 AAAGGGTTTTGCAAACTGAAAGATCTGTAGAGAGTAGCAGTATTTCAYTGGTACCTGGTACTGATTATGG                 CACTCAGGAAAGTATCTCGTTACTGGAAGTTAGCACTCTAGGGAAGGCAAAAACAGAACCAAATAAATGT                 GTGAGTCAGTGTGCAGCATTTGAAAACCCCAAGGGACTAATTCATGGTTGTTCCAAAGATAATAGAAATG                 ACACAGAAGGCTTTAAGTATCCATTGGGACATGAAGTTAACCACAGTCGGGAAACAAGCATAGAAATGGA                 AGAAAGTGAACTTGATGCTCAGTATTTGCAGAATACATTCAAGGTTTCAAAGCGCCAGTCATTTGCTCYG                 TTTTCAAATCCAGGAAATGCAGAAGAGGAATGTGCAACATTCTCTGCCCACTCTGGGTCCTTAAAGAAAC                 AAAGTCCAAAAGTCACTTTTGAATGTGAACAAAAGGAAGAAAATCAAGGAAAGAATGAGTCTAATATCAA                 GCCTGTACAGACAGTTAATATCACTGCAGGCTTTCCTGTGGTTGGTCAGAAAGAGCCTGTACAGACAGTT                 AATATCACTGCAGGCTTTCCTGTGGTTGGTCAGAAAGA"
        },
        "coordinateInterval": {
          "coordinateSystem": {
            "system": {
              "coding": [
                {
                  "system": "http://loinc.org",
                  "code": "LA30100-4",
                  "display": "0-based interval counting"
                }
              ],
              "text": "0-based interval counting"
            }
          },
          "startQuantity": {
            "value": 0
          },
          "endQuantity": {
            "value": 754
          }
        },
        "reverseComplement": false
      },
      "concatenated": {
        "sequenceElement": [
          {
            "sequence": {
              "reference": "MolecularDefinition/example-sequence0-2b-concatenated",
              "type": "MolecularDefinition",
              "display": "Sequence-of index 0-Resource for concatenated sequence example:                     ATGAACAGACAAGTAAAAGACATGACAGYGATACTTTCCCAGAGCTGAAGTTAACAAATGCACCTGGTTC TTTTACTAAGTGTTCAAATACCAGTGAACTTAAAGAATTTGTCAATCCTAGCCTTCCAAGAGAAGAAAAA GAAGAGAAACTAGAAACAGTTAAAGTGTCTAATAATGCTGAAGACCCCAAAGATCTCATGTTAAGTGGAG"
            },
            "ordinalIndex": 0
          },
          {
            "sequence": {
              "reference": "MolecularDefinition/example-sequence1-2b-concatenated",
              "type": "MolecularDefinition",
              "display": "Sequence-of index 1-Resource for concatenated sequence example:                     AAAGGGTTTTGCAAACTGAAAGATCTGTAGAGAGTAGCAGTATTTCAYTGGTACCTGGTACTGATTATGG CACTCAGGAAAGTATCTCGTTACTGGAAGTTAGCACTCTAGGGAAGGCAAAAACAGAACCAAATAAATGT GTGAGTCAGTGTGCAGCATTTGAAAACCCCAAGGGACTAATTCATGGTTGTTCCAAAGATAATAGAAATG ACACAGAAGGCTTTAAGTATCCATTGGGACATGAAGTTAACCACAGTCGGGAAACAAGCATAGAAATGGA AGAAAGTGAACTTGATGCTCAGTATTTGCAGAATACATTCAAGGTTTCAAAGCGCCAGTCATTTGCTCYG"
            },
            "ordinalIndex": 1
          },
          {
            "sequence": {
              "reference": "MolecularDefinition/example-sequence2-2b-concatenated",
              "type": "MolecularDefinition",
              "display": "Sequence-of index 2-Resource for concatenated sequence example:                     TTTTCAAATCCAGGAAATGCAGAAGAGGAATGTGCAACATTCTCTGCCCACTCTGGGTCCTTAAAGAAAC AAAGTCCAAAAGTCACTTTTGAATGTGAACAAAAGGAAGAAAATCAAGGAAAGAATGAGTCTAATATCAA GCCTGTACAGACAGTTAATATCACTGCAGGCTTTCCTGTGGTTGGTCAGAAAGA"
            },
            "ordinalIndex": 2
          }
        ]
      },
      "relative": {
        "startingMolecule": {
          "reference": "MolecularDefinition/example-starting-sequence-2b-relative",
          "type": "MolecularDefinition",
          "display": "Starting Sequence Resource"
        },
        "edit": [
          {
            "coordinateInterval": {
              "coordinateSystem": {
                "system": {
                  "coding": [
                    {
                      "system": "http://loinc.org",
                      "code": "LA30100-4",
                      "display": "0-based interval counting"
                    }
                  ],
                  "text": "0-based interval counting"
                }
              },
              "startQuantity": {
                "value": 0
              },
              "endQuantity": {
                "value": 5
              }
            },
            "replacementMolecule": {
              "reference": "MolecularDefinition/example-replacement-sequence",
              "type": "MolecularDefinition",
              "display": "Replacement Sequence Resource: ATGAA"
            },
            "replacedMolecule": {
              "reference": "MolecularDefinition/example-replaced-sequence",
              "type": "MolecularDefinition",
              "display": "Replaced Sequence Resource: CCCCC"
            }
          }
        ]
      }
    }
  ]
}