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Packagehl7.fhir.uv.cg-incubator
Resource TypeMolecularDefinition
IdMolecularDefinition-example-sequence-cyp2c19-gene-region.json
FHIR VersionR6

Resources that use this resource

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Resources that this resource uses

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Narrative

Note: links and images are rebased to the (stated) source

Generated Narrative: MolecularDefinition example-sequence-cyp2c19-gene-region

Language: en

moleculeType: DNA sequence

representation

extracted

startingMolecule: Homo sapiens cytochrome P450 family 2 subfamily C member 19 (CYP2C19), RefSeqGene (LRG_584) on chromosome 10

coordinateInterval

CoordinateSystems

-System
*0-based interval counting

start: 5001

end: 97867

reverseComplement: false


Source1

{
  "resourceType": "MolecularDefinition",
  "resourceDefinition": "http://hl7.org/fhir/StructureDefinition/MolecularDefinition|0.1.0-ci-build",
  "id": "example-sequence-cyp2c19-gene-region",
  "language": "en",
  "text": {
    "status": "generated",
    "div": "<!-- snip (see above) -->"
  },
  "moleculeType": {
    "coding": [
      {
        "system": "http://hl7.org/fhir/uv/cg-incubator/CodeSystem/moleculardefinition-moleculetype",
        "code": "dna",
        "display": "DNA sequence"
      }
    ]
  },
  "representation": [
    {
      "extracted": {
        "startingMolecule": {
          "reference": "MolecularDefinition/example-sequence-cyp2c19-accession",
          "type": "MolecularDefinition",
          "display": "Homo sapiens cytochrome P450 family 2 subfamily C member 19 (CYP2C19), RefSeqGene (LRG_584) on chromosome 10"
        },
        "coordinateInterval": {
          "coordinateSystem": {
            "system": {
              "coding": [
                {
                  "system": "http://loinc.org",
                  "code": "LA30100-4",
                  "display": "0-based interval counting"
                }
              ],
              "text": "0-based interval counting"
            }
          },
          "startQuantity": {
            "value": 5001
          },
          "endQuantity": {
            "value": 97867
          }
        },
        "reverseComplement": false
      }
    }
  ]
}