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Packagehl7.fhir.uv.cg-incubator
Resource TypeCodeSystem
IdCodeSystem-nucleotide-dna.json
FHIR VersionR6
Sourcehttps://build.fhir.org/ig/HL7/cg-incubator/CodeSystem-nucleotide-dna.html
URLhttp://hl7.org/fhir/uv/cg-incubator/CodeSystem/nucleotide-dna
Version0.1.0-ci-build
Statusdraft
Date2026-03-23
NameNucleotideDNA
TitleNucleotide DNA Symbols
Realmuv
Authorityhl7
DescriptionSingle-letter symbols for DNA residues based on IUPAC nomenclature, including unambiguous, ambiguous, and N symbols.
Contentcomplete

Resources that use this resource

ValueSet
hl7.fhir.uv.cg-incubator#currentnucleotide-dna-1letter-ambiguousNucleotide DNA 1-letter Ambiguous Symbols ValueSet
hl7.fhir.uv.cg-incubator#currentnucleotide-dna-1letter-unambiguousNucleotide DNA 1-letter Unambiguous Symbols ValueSet
hl7.fhir.uv.cg-incubator#currentnucleotide-dna-1letter-with-nNucleotide DNA 1-letter Unambiguous Symbols Including N ValueSet

Resources that this resource uses

No resources found


Narrative

Note: links and images are rebased to the (stated) source

Generated Narrative: CodeSystem nucleotide-dna

Last updated: 2026-03-23 00:00:00+0000

Profile: Shareable CodeSystem

This case-sensitive code system http://hl7.org/fhir/uv/cg-incubator/CodeSystem/nucleotide-dna defines the following codes:

CodeDisplayDefinition
G GuanineG
A AdenineA
T ThymineT
C CytosineC
R PurineG or A
Y PyrimidineT or C
M AminoA or C
K KetoG or T
S Strong interaction (3 H bonds)G or C
W Weak interaction (2 H bonds)A or T
H Not-G (H follows G in the alphabet)A or C or T
B Not-A (B follows A)G or T or C
V Not-T/Not-U (V follows U)G or C or A
D Not-C (D follows C)G or A or T
N Any nucleotideG or A or T or C

Source1

{
  "resourceType": "CodeSystem",
  "id": "nucleotide-dna",
  "meta": {
    "lastUpdated": "2026-03-23T00:00:00Z",
    "profile": [
      "http://hl7.org/fhir/StructureDefinition/shareablecodesystem"
    ]
  },
  "text": {
    "status": "generated",
    "div": "<!-- snip (see above) -->"
  },
  "extension": [
    {
      "url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg",
      "valueCode": "cg"
    },
    {
      "url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-standards-status",
      "valueCode": "informative"
    },
    {
      "url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fmm",
      "valueInteger": 0
    }
  ],
  "url": "http://hl7.org/fhir/uv/cg-incubator/CodeSystem/nucleotide-dna",
  "version": "0.1.0-ci-build",
  "name": "NucleotideDNA",
  "title": "Nucleotide DNA Symbols",
  "status": "draft",
  "experimental": true,
  "date": "2026-03-23",
  "publisher": "HL7 International / Clinical Genomics",
  "contact": [
    {
      "name": "HL7 International / Clinical Genomics",
      "telecom": [
        {
          "system": "url",
          "value": "http://www.hl7.org/Special/committees/clingenomics"
        },
        {
          "system": "email",
          "value": "clingenomics@lists.hl7.org"
        }
      ]
    }
  ],
  "description": "Single-letter symbols for DNA residues based on IUPAC nomenclature, including unambiguous, ambiguous, and N symbols.",
  "jurisdiction": [
    {
      "coding": [
        {
          "system": "http://unstats.un.org/unsd/methods/m49/m49.htm",
          "code": "001",
          "display": "World"
        }
      ]
    }
  ],
  "caseSensitive": true,
  "content": "complete",
  "concept": [
    {
      "code": "G",
      "display": "Guanine",
      "definition": "G"
    },
    {
      "code": "A",
      "display": "Adenine",
      "definition": "A"
    },
    {
      "code": "T",
      "display": "Thymine",
      "definition": "T"
    },
    {
      "code": "C",
      "display": "Cytosine",
      "definition": "C"
    },
    {
      "code": "R",
      "display": "Purine",
      "definition": "G or A"
    },
    {
      "code": "Y",
      "display": "Pyrimidine",
      "definition": "T or C"
    },
    {
      "code": "M",
      "display": "Amino",
      "definition": "A or C"
    },
    {
      "code": "K",
      "display": "Keto",
      "definition": "G or T"
    },
    {
      "code": "S",
      "display": "Strong interaction (3 H bonds)",
      "definition": "G or C"
    },
    {
      "code": "W",
      "display": "Weak interaction (2 H bonds)",
      "definition": "A or T"
    },
    {
      "code": "H",
      "display": "Not-G (H follows G in the alphabet)",
      "definition": "A or C or T"
    },
    {
      "code": "B",
      "display": "Not-A (B follows A)",
      "definition": "G or T or C"
    },
    {
      "code": "V",
      "display": "Not-T/Not-U (V follows U)",
      "definition": "G or C or A"
    },
    {
      "code": "D",
      "display": "Not-C (D follows C)",
      "definition": "G or A or T"
    },
    {
      "code": "N",
      "display": "Any nucleotide",
      "definition": "G or A or T or C"
    }
  ]
}