FHIR IG analytics| Package | hl7.fhir.uv.cg-incubator |
| Resource Type | Bundle |
| Id | validation-oo.json |
| FHIR Version | R6 |
No resources found
No resources found
No narrative content found in resource
{
"resourceType": "Bundle",
"type": "collection",
"timestamp": "2026-03-24T14:43:40.684+00:00",
"entry": [
{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/ImplementationGuide-hl7.fhir.uv.cg-incubator",
"resource": {
"resourceType": "OperationOutcome",
"id": "ImplementationGuide-hl7.fhir.uv.cg-incubator",
"issue": [
{
"extension": [
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"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
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{
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{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "InstanceValidator"
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-message-id",
"valueCode": "IG_DEPENDENCY_VERSION_WARNING"
}
],
"severity": "warning",
"code": "business-rule",
"details": {
"text": "The ImplementationGuide is based on FHIR version 6.0.0-ballot3 but package hl7.terminology.r5#7.1.0 is based on FHIR version 5.0.0. In general, this version mismatch should be avoided - some tools will try to make this work with variable degrees of success, but others will not even try"
},
"expression": [
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{
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{
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{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-message-id",
"valueCode": "IG_DEPENDENCY_CLASH_PACKAGEID"
}
],
"severity": "error",
"code": "business-rule",
"details": {
"text": "The canonical URL http://hl7.org/fhir/extensions/ImplementationGuide/hl7.fhir.uv.extensions points to the package hl7.fhir.uv.extensions which is inconsistent with the stated packageId of hl7.fhir.uv.extensions.r5"
},
"expression": [
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{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/Device-NGS-device",
"resource": {
"resourceType": "OperationOutcome",
"id": "Device-NGS-device"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/Device-Triodenovo-SW",
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"resourceType": "OperationOutcome",
"id": "Device-Triodenovo-SW"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/DocumentReference-CNVAnalysis-called",
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"resourceType": "OperationOutcome",
"id": "DocumentReference-CNVAnalysis-called"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/DocumentReference-SimpleVariantAnalysis-called",
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"resourceType": "OperationOutcome",
"id": "DocumentReference-SimpleVariantAnalysis-called"
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},
{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/DocumentReference-WES-FullSequencedRegion-GRCh38",
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"resourceType": "OperationOutcome",
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},
{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/DocumentReference-genomicBEDfile",
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"resourceType": "OperationOutcome",
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{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/DocumentReference-genomicFile1",
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"resourceType": "OperationOutcome",
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{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/DocumentReference-genomicFile2",
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"resourceType": "OperationOutcome",
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},
{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/DocumentReference-genomicFile3",
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"resourceType": "OperationOutcome",
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},
{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/DocumentReference-genomicFile4",
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"resourceType": "OperationOutcome",
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},
{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/DocumentReference-genomicFileFather",
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"resourceType": "OperationOutcome",
"id": "DocumentReference-genomicFileFather"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/DocumentReference-genomicFileGroupAsSubject",
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"resourceType": "OperationOutcome",
"id": "DocumentReference-genomicFileGroupAsSubject"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/DocumentReference-genomicFileMother",
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"resourceType": "OperationOutcome",
"id": "DocumentReference-genomicFileMother"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/DocumentReference-genomicFileProband",
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"resourceType": "OperationOutcome",
"id": "DocumentReference-genomicFileProband"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/DocumentReference-genomicVCFfile",
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"resourceType": "OperationOutcome",
"id": "DocumentReference-genomicVCFfile"
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},
{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/DocumentReference-genomicVCFfile-cnv",
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"resourceType": "OperationOutcome",
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{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/DocumentReference-genomicVCFfile-simple",
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"resourceType": "OperationOutcome",
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{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/DocumentReference-pgxVCFfile",
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"resourceType": "OperationOutcome",
"id": "DocumentReference-pgxVCFfile"
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{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/DocumentReference-somaticCalledRegions",
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"resourceType": "OperationOutcome",
"id": "DocumentReference-somaticCalledRegions"
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{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/DocumentReference-somaticFusionFile",
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"resourceType": "OperationOutcome",
"id": "DocumentReference-somaticFusionFile"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/DocumentReference-somaticRNAstudiedRegions",
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"resourceType": "OperationOutcome",
"id": "DocumentReference-somaticRNAstudiedRegions"
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},
{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/DocumentReference-somaticVCFfile",
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"resourceType": "OperationOutcome",
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{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/Encounter-denovoEncounter",
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"resourceType": "OperationOutcome",
"id": "Encounter-denovoEncounter"
}
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"resourceType": "OperationOutcome",
"id": "Encounter-genomicEncounter"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/Group-groupDenovoFamily",
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"resourceType": "OperationOutcome",
"id": "Group-groupDenovoFamily"
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{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/Patient-denovoChild",
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"resourceType": "OperationOutcome",
"id": "Patient-denovoChild"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/Patient-denovoFather",
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"resourceType": "OperationOutcome",
"id": "Patient-denovoFather"
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},
{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/Patient-denovoMother",
"resource": {
"resourceType": "OperationOutcome",
"id": "Patient-denovoMother"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/Patient-father",
"resource": {
"resourceType": "OperationOutcome",
"id": "Patient-father"
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{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/Patient-genomicPatient",
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"resourceType": "OperationOutcome",
"id": "Patient-genomicPatient"
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},
{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/Patient-mother",
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"resourceType": "OperationOutcome",
"id": "Patient-mother"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/Patient-pgxPatient",
"resource": {
"resourceType": "OperationOutcome",
"id": "Patient-pgxPatient"
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{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/Patient-proband",
"resource": {
"resourceType": "OperationOutcome",
"id": "Patient-proband"
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},
{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/Patient-somaticPatient",
"resource": {
"resourceType": "OperationOutcome",
"id": "Patient-somaticPatient"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/Practitioner-practitioner01",
"resource": {
"resourceType": "OperationOutcome",
"id": "Practitioner-practitioner01"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/Practitioner-practitioner02",
"resource": {
"resourceType": "OperationOutcome",
"id": "Practitioner-practitioner02"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/RelatedPerson-relatedPersonDenovoFather",
"resource": {
"resourceType": "OperationOutcome",
"id": "RelatedPerson-relatedPersonDenovoFather"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/RelatedPerson-relatedPersonDenovoMother",
"resource": {
"resourceType": "OperationOutcome",
"id": "RelatedPerson-relatedPersonDenovoMother"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/ServiceRequest-genomicSRFather",
"resource": {
"resourceType": "OperationOutcome",
"id": "ServiceRequest-genomicSRFather"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/ServiceRequest-genomicSRMother",
"resource": {
"resourceType": "OperationOutcome",
"id": "ServiceRequest-genomicSRMother"
}
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{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/ServiceRequest-genomicSRProband",
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"resourceType": "OperationOutcome",
"id": "ServiceRequest-genomicSRProband"
}
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{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/ServiceRequest-genomicServiceRequest",
"resource": {
"resourceType": "OperationOutcome",
"id": "ServiceRequest-genomicServiceRequest"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/ServiceRequest-genomicServiceRequest2",
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"resourceType": "OperationOutcome",
"id": "ServiceRequest-genomicServiceRequest2"
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{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/ServiceRequest-genomicServiceRequest3",
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"resourceType": "OperationOutcome",
"id": "ServiceRequest-genomicServiceRequest3"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/ServiceRequest-genomicServiceRequest4",
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"resourceType": "OperationOutcome",
"id": "ServiceRequest-genomicServiceRequest4"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/ServiceRequest-pgxServiceRequest",
"resource": {
"resourceType": "OperationOutcome",
"id": "ServiceRequest-pgxServiceRequest"
}
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{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/ServiceRequest-somaticServiceRequest",
"resource": {
"resourceType": "OperationOutcome",
"id": "ServiceRequest-somaticServiceRequest"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/Specimen-denovo-1",
"resource": {
"resourceType": "OperationOutcome",
"id": "Specimen-denovo-1"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/Specimen-denovo-2",
"resource": {
"resourceType": "OperationOutcome",
"id": "Specimen-denovo-2"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/Specimen-denovo-3",
"resource": {
"resourceType": "OperationOutcome",
"id": "Specimen-denovo-3"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/Specimen-genomicSpecimen",
"resource": {
"resourceType": "OperationOutcome",
"id": "Specimen-genomicSpecimen"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/Specimen-normalSpecimen",
"resource": {
"resourceType": "OperationOutcome",
"id": "Specimen-normalSpecimen"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/Specimen-pgxSpecimen",
"resource": {
"resourceType": "OperationOutcome",
"id": "Specimen-pgxSpecimen"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/Specimen-specimenFather",
"resource": {
"resourceType": "OperationOutcome",
"id": "Specimen-specimenFather"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/Specimen-specimenMother",
"resource": {
"resourceType": "OperationOutcome",
"id": "Specimen-specimenMother"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/Specimen-specimenProband",
"resource": {
"resourceType": "OperationOutcome",
"id": "Specimen-specimenProband"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/Specimen-tumorSpecimen",
"resource": {
"resourceType": "OperationOutcome",
"id": "Specimen-tumorSpecimen"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/StructureDefinition-GenomicStudy",
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"resourceType": "OperationOutcome",
"id": "StructureDefinition-GenomicStudy",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
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},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
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},
{
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{
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{
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"valueString": "http://hl7.org/fhir/StructureDefinition/StructureDefinition|6.0.0-ballot3"
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],
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},
"expression": [
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]
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{
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{
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{
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{
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{
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"valueString": "http://hl7.org/fhir/StructureDefinition/StructureDefinition|6.0.0-ballot3"
}
],
"severity": "warning",
"code": "invariant",
"details": {
"text": "Constraint failed: eld-31: 'additionalBindings should have a key (key.exists())' (defined in http://hl7.org/fhir/StructureDefinition/ElementDefinition) (Best Practice Recommendation)"
},
"expression": [
"StructureDefinition/GenomicStudy: StructureDefinition.snapshot.element[4].binding.additional[0]"
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}
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},
{
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}
},
{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/CodeSystem-genomicstudy-dataformat",
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}
},
{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/CodeSystem-genomicstudy-methodtype",
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},
{
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{
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}
},
{
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"id": "CodeSystem-genomicstudy-type"
}
},
{
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{
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{
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{
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},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-context",
"valueString": "http://hl7.org/fhir/StructureDefinition/GenomicStudy|0.1.0-ci-build"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
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]
},
{
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{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
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},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
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{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
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{
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"valueString": "http://hl7.org/fhir/StructureDefinition/GenomicStudy|0.1.0-ci-build"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
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]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
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{
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{
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{
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"valueString": "http://hl7.org/fhir/StructureDefinition/GenomicStudy|0.1.0-ci-build"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
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{
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{
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{
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{
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},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-context",
"valueString": "http://hl7.org/fhir/StructureDefinition/GenomicStudy|0.1.0-ci-build"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
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{
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{
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{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-context",
"valueString": "http://hl7.org/fhir/StructureDefinition/GenomicStudy|0.1.0-ci-build"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
"GenomicStudy/example-lungMass: GenomicStudy.analysis[1].changeType[0].coding[0]"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 285
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 26
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-message-id",
"valueCode": "UNKNOWN_CODESYSTEM"
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-context",
"valueString": "http://hl7.org/fhir/StructureDefinition/GenomicStudy|0.1.0-ci-build"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"GenomicStudy/example-lungMass: GenomicStudy.analysis[1].genomicRegion[2].locus[0].concept.coding[0].system"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/GenomicStudy-example-pgx",
"resource": {
"resourceType": "OperationOutcome",
"id": "GenomicStudy-example-pgx",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 61
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 21
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-message-id",
"valueCode": "UNKNOWN_CODESYSTEM"
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-context",
"valueString": "http://hl7.org/fhir/StructureDefinition/GenomicStudy|0.1.0-ci-build"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
"GenomicStudy/example-pgx: GenomicStudy.analysis[0].changeType[0].coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 68
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 21
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-context",
"valueString": "http://hl7.org/fhir/StructureDefinition/GenomicStudy|0.1.0-ci-build"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
"GenomicStudy/example-pgx: GenomicStudy.analysis[0].changeType[1].coding[0]"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 116
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 26
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-context",
"valueString": "http://hl7.org/fhir/StructureDefinition/GenomicStudy|0.1.0-ci-build"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"GenomicStudy/example-pgx: GenomicStudy.analysis[0].genomicRegion[0].locus[0].concept.coding[0]"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 126
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 26
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-context",
"valueString": "http://hl7.org/fhir/StructureDefinition/GenomicStudy|0.1.0-ci-build"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"GenomicStudy/example-pgx: GenomicStudy.analysis[0].genomicRegion[0].locus[1].concept.coding[0]"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 136
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 26
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-context",
"valueString": "http://hl7.org/fhir/StructureDefinition/GenomicStudy|0.1.0-ci-build"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"GenomicStudy/example-pgx: GenomicStudy.analysis[0].genomicRegion[0].locus[2].concept.coding[0]"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 156
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 26
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-context",
"valueString": "http://hl7.org/fhir/StructureDefinition/GenomicStudy|0.1.0-ci-build"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"GenomicStudy/example-pgx: GenomicStudy.analysis[0].genomicRegion[1].locus[0].concept.coding[0]"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 165
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 26
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-context",
"valueString": "http://hl7.org/fhir/StructureDefinition/GenomicStudy|0.1.0-ci-build"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"GenomicStudy/example-pgx: GenomicStudy.analysis[0].genomicRegion[1].locus[1].concept.coding[0]"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 174
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 26
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-context",
"valueString": "http://hl7.org/fhir/StructureDefinition/GenomicStudy|0.1.0-ci-build"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"GenomicStudy/example-pgx: GenomicStudy.analysis[0].genomicRegion[1].locus[2].concept.coding[0]"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/GenomicStudy-example-somaticStudy",
"resource": {
"resourceType": "OperationOutcome",
"id": "GenomicStudy-example-somaticStudy",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 67
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 21
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-message-id",
"valueCode": "UNKNOWN_CODESYSTEM"
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-context",
"valueString": "http://hl7.org/fhir/StructureDefinition/GenomicStudy|0.1.0-ci-build"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
"GenomicStudy/example-somaticStudy: GenomicStudy.analysis[0].changeType[0].coding[0].system"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 74
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 21
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-context",
"valueString": "http://hl7.org/fhir/StructureDefinition/GenomicStudy|0.1.0-ci-build"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
"GenomicStudy/example-somaticStudy: GenomicStudy.analysis[0].changeType[1].coding[0]"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 81
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 21
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-context",
"valueString": "http://hl7.org/fhir/StructureDefinition/GenomicStudy|0.1.0-ci-build"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
"GenomicStudy/example-somaticStudy: GenomicStudy.analysis[0].changeType[2].coding[0]"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 88
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 21
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-context",
"valueString": "http://hl7.org/fhir/StructureDefinition/GenomicStudy|0.1.0-ci-build"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
"GenomicStudy/example-somaticStudy: GenomicStudy.analysis[0].changeType[3].coding[0]"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 180
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 26
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-context",
"valueString": "http://hl7.org/fhir/StructureDefinition/GenomicStudy|0.1.0-ci-build"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated"
},
"expression": [
"GenomicStudy/example-somaticStudy: GenomicStudy.analysis[0].genomicRegion[2].locus[0].concept.coding[0]"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 242
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 21
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-context",
"valueString": "http://hl7.org/fhir/StructureDefinition/GenomicStudy|0.1.0-ci-build"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
"GenomicStudy/example-somaticStudy: GenomicStudy.analysis[1].changeType[0].coding[0]"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 249
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 21
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-context",
"valueString": "http://hl7.org/fhir/StructureDefinition/GenomicStudy|0.1.0-ci-build"
}
],
"severity": "warning",
"code": "not-found",
"details": {
"text": "A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated"
},
"expression": [
"GenomicStudy/example-somaticStudy: GenomicStudy.analysis[1].changeType[1].coding[0]"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/GenomicStudy-example-trio2",
"resource": {
"resourceType": "OperationOutcome",
"id": "GenomicStudy-example-trio2"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/GenomicStudy-example",
"resource": {
"resourceType": "OperationOutcome",
"id": "GenomicStudy-example"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/List-GenomicStudy-examples",
"resource": {
"resourceType": "OperationOutcome",
"id": "List-GenomicStudy-examples"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/List-GenomicStudy-operations",
"resource": {
"resourceType": "OperationOutcome",
"id": "List-GenomicStudy-operations"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/ValueSet-genomicstudy-changetype",
"resource": {
"resourceType": "OperationOutcome",
"id": "ValueSet-genomicstudy-changetype"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/ValueSet-genomicstudy-dataformat",
"resource": {
"resourceType": "OperationOutcome",
"id": "ValueSet-genomicstudy-dataformat"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/ValueSet-genomicstudy-methodtype",
"resource": {
"resourceType": "OperationOutcome",
"id": "ValueSet-genomicstudy-methodtype"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/ValueSet-genomicstudy-regiontype",
"resource": {
"resourceType": "OperationOutcome",
"id": "ValueSet-genomicstudy-regiontype"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/ValueSet-genomicstudy-status",
"resource": {
"resourceType": "OperationOutcome",
"id": "ValueSet-genomicstudy-status"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/ValueSet-genomicstudy-type",
"resource": {
"resourceType": "OperationOutcome",
"id": "ValueSet-genomicstudy-type"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/ValueSet-hgnc-vs",
"resource": {
"resourceType": "OperationOutcome",
"id": "ValueSet-hgnc-vs",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "exception",
"details": {
"text": "Error from https://tx.fhir.org/r5: Error: A definition for CodeSystem 'http://www.genenames.org' could not be found, so the value set cannot be expanded\r\n"
},
"expression": [
"ValueSet.where(id = 'hgnc-vs')"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "TerminologyEngine"
}
],
"severity": "warning",
"code": "exception",
"details": {
"text": "Error from https://tx.fhir.org/r5: Error: A definition for CodeSystem 'http://www.genenames.org' could not be found, so the value set cannot be expanded\r\n"
},
"expression": [
"ValueSet.where(id = 'hgnc-vs')"
]
}
]
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/DocumentReference-example-genomicFile-af1961831-url",
"resource": {
"resourceType": "OperationOutcome",
"id": "DocumentReference-example-genomicFile-af1961831-url"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/DocumentReference-example-genomicFile-cyp2c19-accession",
"resource": {
"resourceType": "OperationOutcome",
"id": "DocumentReference-example-genomicFile-cyp2c19-accession"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/DocumentReference-example-genomicFile-cyp2c19-attached",
"resource": {
"resourceType": "OperationOutcome",
"id": "DocumentReference-example-genomicFile-cyp2c19-attached"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/DocumentReference-example-genomicFile-cyp2c19-url",
"resource": {
"resourceType": "OperationOutcome",
"id": "DocumentReference-example-genomicFile-cyp2c19-url"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/DocumentReference-example-genomicFile-hla00001",
"resource": {
"resourceType": "OperationOutcome",
"id": "DocumentReference-example-genomicFile-hla00001"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/DocumentReference-example-genomicFile-mw7162561",
"resource": {
"resourceType": "OperationOutcome",
"id": "DocumentReference-example-genomicFile-mw7162561"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/DocumentReference-example-genomicFile-ng0083843",
"resource": {
"resourceType": "OperationOutcome",
"id": "DocumentReference-example-genomicFile-ng0083843"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/DocumentReference-example-genomicFile-nm0002513",
"resource": {
"resourceType": "OperationOutcome",
"id": "DocumentReference-example-genomicFile-nm0002513"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/DocumentReference-example-genomicFile-nm0007694",
"resource": {
"resourceType": "OperationOutcome",
"id": "DocumentReference-example-genomicFile-nm0007694"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/DocumentReference-example-genomicFile-nm0020245",
"resource": {
"resourceType": "OperationOutcome",
"id": "DocumentReference-example-genomicFile-nm0020245"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/DocumentReference-example-genomicfile-nc00001010-url",
"resource": {
"resourceType": "OperationOutcome",
"id": "DocumentReference-example-genomicfile-nc00001010-url"
}
},
{
"fullUrl": "http://hl7.org/fhir/uv/cg-incubator/OperationOutcome/StructureDefinition-MolecularDefinition",
"resource": {
"resourceType": "OperationOutcome",
"id": "StructureDefinition-MolecularDefinition",
"issue": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-col",
"valueInteger": 210094
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-source",
"valueString": "InstanceValidator"
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-message-id",
"valueCode": "SD_TYPE_NOT_LOCAL"
},
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-context",
"valueString": "http://hl7.org/fhir/StructureDefinition/StructureDefinition|6.0.0-ballot3"
}
],
"severity": "error",
"code": "invalid",
"details": {
"text": "The type MolecularDefinition is not legal because it is not defined in the FHIR specification. Other types must have a namespace on them"
},
"expression": [
"StructureDefinition/MolecularDefinition: StructureDefinition.type"
]
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/operationoutcome-issue-line",
"valueInteger": 1
},
{
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