FHIR IG analytics| Package | hl7.fhir.us.mcode.r4b |
| Resource Type | Observation |
| Id | Observation-gx-genomic-variant-fusion-ETV6-RUNX1-brian-l.json |
| FHIR Version | R4B |
No resources found
No resources found
Note: links and images are rebased to the (stated) source
Generated Narrative: Observation gx-genomic-variant-fusion-ETV6-RUNX1-brian-l
status: Final
category: Laboratory
code: Genetic variant assessment
subject: Brian L Male, DoB: 2021-01-01 ( Medical Record Number: MRN5678 (use: usual, ))
effective: 2024-01-08
performer: Practitioner Owen Oncologist
value: Present
method: Karyotyping
component
code: Gene studied [ID]
value: ETV6
component
code: Gene studied [ID]
value: RUNx1
component
code: DNA change type
value: chromosomal_translocation
component
code: Genomic source class [Type]
value: Somatic
FHIR
FHIRsmith{
"resourceType": "Observation",
"id": "gx-genomic-variant-fusion-ETV6-RUNX1-brian-l",
"meta": {
"profile": [
"http://hl7.org/fhir/us/mcode/StructureDefinition/mcode-genomic-variant"
]
},
"text": {
"status": "generated",
"div": "<!-- snip (see above) -->"
},
"status": "final",
"category": [
{
"coding": [
{
"system": "http://terminology.hl7.org/CodeSystem/observation-category",
"code": "laboratory"
}
]
}
],
"code": {
"coding": [
{
"system": "http://loinc.org",
"code": "69548-6"
}
]
},
"subject": {
"reference": "Patient/cancer-patient-brian-l"
},
"effectiveDateTime": "2024-01-08",
"performer": [
{
"reference": "Practitioner/us-core-practitioner-owen-oncologist"
}
],
"valueCodeableConcept": {
"coding": [
{
"system": "http://loinc.org",
"code": "LA9633-4",
"display": "Present"
}
]
},
"method": {
"coding": [
{
"system": "http://loinc.org",
"code": "LA26406-1",
"display": "Karyotyping"
}
]
},
"component": [
{
"code": {
"coding": [
{
"system": "http://loinc.org",
"code": "48018-6"
}
]
},
"valueCodeableConcept": {
"coding": [
{
"system": "http://www.genenames.org",
"code": "HGNC:3495",
"display": "ETV6"
}
]
}
},
{
"code": {
"coding": [
{
"system": "http://loinc.org",
"code": "48018-6"
}
]
},
"valueCodeableConcept": {
"coding": [
{
"system": "http://www.genenames.org",
"code": "HGNC:10471",
"display": "RUNx1"
}
]
}
},
{
"code": {
"coding": [
{
"system": "http://loinc.org",
"code": "48019-4"
}
]
},
"valueCodeableConcept": {
"coding": [
{
"system": "http://www.sequenceontology.org/",
"code": "SO:1000044",
"display": "chromosomal_translocation"
}
]
}
},
{
"code": {
"coding": [
{
"system": "http://loinc.org",
"code": "48002-0"
}
]
},
"valueCodeableConcept": {
"coding": [
{
"system": "http://loinc.org",
"code": "LA6684-0",
"display": "Somatic"
}
]
}
}
]
}