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Packagehl7.eu.fhir.protect-child
Resource TypeValueSet
IdValueSet-dm-microbiology-variable-vs.json
FHIR VersionR4
Sourcehttps://build.fhir.org/ig/hl7-eu/protect-child/ValueSet-dm-microbiology-variable-vs.html
URLhttps://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/ValueSet/dm-microbiology-variable-vs
Version0.1.0-ci-build
Statusdraft
Date2026-09-28T06:51:47+00:00
NameDmMicrobiologyVariableVS
TitlePROTECT-CHILD DM microbiology variables
Realmeu
Authorityhl7
DescriptionThe columns of the DMv1.2 microbiology table, as DmVariableCS codes. Source value set of ConceptMap DmMicrobiologyToFhir.

Resources that use this resource

ConceptMap
hl7.eu.fhir.protect-child#currentdm-microbiology-to-fhirDM microbiology columns → FHIR test codes

Resources that this resource uses

CodeSystem
hl7.eu.fhir.protect-child#currentdm-variable-csPROTECT-CHILD Data Model Variables

Narrative

Note: links and images are rebased to the (stated) source

Generated Narrative: ValueSet dm-microbiology-variable-vs

  • Include these codes as defined in https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/dm-variable-cs version 📦0.1.0-ci-build
    CodeDisplayDefinitionDM microbiology columns → FHIR test codes
    microbiology.ebv_dnamicrobiology.ebv_dnaDMv1.2 column microbiology.ebv_dna: EBV nucleic acid test result.~5002-1(MicrobiologyNucleicAcid.code)
    microbiology.ebv_dna_copiesmicrobiology.ebv_dna_copiesDMv1.2 column microbiology.ebv_dna_copies: EBV-DNA (copies/ml).~36923-1(MicrobiologyViralLoad.code)
    microbiology.ebv_igm_anti_eamicrobiology.ebv_igm_anti_eaDMv1.2 column microbiology.ebv_igm_anti_ea: Presence of IgM antibodies against Epstein–Barr virus Early Antigen (EA).~ebv-ea-igm(MicrobiologySerology.code. LOINC has no IgM-specific EBV early-antigen code; 7882-4 (early Ab, any isotype) is broader.)
    microbiology.ebv_igm_anti_vcamicrobiology.ebv_igm_anti_vcaDMv1.2 column microbiology.ebv_igm_anti_vca: Presence of IgM antibodies against EBV Viral Capsid Antigen (VCA).~30340-4(MicrobiologySerology.code. The OMOP sheet maps this to 3012732 (EBNA IgM, LOINC 7884-0), which is a different antigen.)
    microbiology.ebv_igg_anti_vcamicrobiology.ebv_igg_anti_vcaDMv1.2 column microbiology.ebv_igg_anti_vca: Presence of IgG antibodies against EBV Viral Capsid Antigen (VCA).~30339-6(MicrobiologySerology.code)
    microbiology.ebv_igg_ebnamicrobiology.ebv_igg_ebnaDMv1.2 column microbiology.ebv_igg_ebna: Presence of IgG antibodies against EBV Nuclear Antigen (EBNA).~7883-2(MicrobiologySerology.code)
    microbiology.cmv_dnamicrobiology.cmv_dnaDMv1.2 column microbiology.cmv_dna: CMV nucleic acid test result.~4996-5(MicrobiologyNucleicAcid.code)
    microbiology.cmv_dna_copiesmicrobiology.cmv_dna_copiesDMv1.2 column microbiology.cmv_dna_copies: CMV-DNA (copies/ml).~29604-6(MicrobiologyViralLoad.code)
    microbiology.cmv_igmmicrobiology.cmv_igmDMv1.2 column microbiology.cmv_igm: Presence of IgM antibodies against cytomegalovirus (CMV).~30325-5(MicrobiologySerology.code)
    microbiology.cmv_iggmicrobiology.cmv_iggDMv1.2 column microbiology.cmv_igg: Presence of IgG antibodies against cytomegalovirus (CMV).~13949-3(MicrobiologySerology.code)
    microbiology.parvovirus_b19_dnamicrobiology.parvovirus_b19_dnaDMv1.2 column microbiology.parvovirus_b19_dna: Detection of parvovirus B19 DNA in the patient’s blood.~50348-2(MicrobiologyNucleicAcid.code)
    microbiology.parvovirus_b19_dna_copiesmicrobiology.parvovirus_b19_dna_copiesDMv1.2 column microbiology.parvovirus_b19_dna_copies: Blood Parvovirus B19 DNA (copies/ml).~49431-0(MicrobiologyViralLoad.code)
    microbiology.parvovirus_b19_iggmicrobiology.parvovirus_b19_iggDMv1.2 column microbiology.parvovirus_b19_igg: Presence of IgG antibodies to parvovirus B19.~29675-6(MicrobiologySerology.code)
    microbiology.parvovirus_b19_igmmicrobiology.parvovirus_b19_igmDMv1.2 column microbiology.parvovirus_b19_igm: Presence of IgM antibodies to parvovirus B19.~7981-4(MicrobiologySerology.code)
    microbiology.hsv_iggmicrobiology.hsv_iggDMv1.2 column microbiology.hsv_igg: Presence of IgG antibodies to herpes simplex virus (HSV).~19106-4(MicrobiologySerology.code)
    microbiology.hsv_igmmicrobiology.hsv_igmDMv1.2 column microbiology.hsv_igm: Presence of IgM antibodies to HSV.~25435-9(MicrobiologySerology.code)
    microbiology.adenovirus_iggmicrobiology.adenovirus_iggDMv1.2 column microbiology.adenovirus_igg: Presence of IgG antibodies to adenovirus.~41162-9(MicrobiologySerology.code)
    microbiology.adenovirus_igmmicrobiology.adenovirus_igmDMv1.2 column microbiology.adenovirus_igm: Presence of IgM antibodies to adenovirus.~21054-2(MicrobiologySerology.code)
    microbiology.blood_adenovirus_dnamicrobiology.blood_adenovirus_dnaDMv1.2 column microbiology.blood_adenovirus_dna: Blood Adenovirus DNA Result.~86511-3(MicrobiologyNucleicAcid.code)
    microbiology.blood_adenovirus_dna_copiesmicrobiology.blood_adenovirus_dna_copiesDMv1.2 column microbiology.blood_adenovirus_dna_copies: Blood Adenovirus DNA (copies/ml).~49341-1(MicrobiologyViralLoad.code)
    microbiology.vzv_iggmicrobiology.vzv_iggDMv1.2 column microbiology.vzv_igg: Presence of IgG antibodies to varicella–zoster virus.~19162-7(MicrobiologySerology.code)
    microbiology.vzv_igmmicrobiology.vzv_igmDMv1.2 column microbiology.vzv_igm: Presence of IgM antibodies to varicella–zoster virus.~21597-0(MicrobiologySerology.code)
    microbiology.blood_bkv_dnamicrobiology.blood_bkv_dnaDMv1.2 column microbiology.blood_bkv_dna: Blood BKV-DNA.~63475-8(MicrobiologyNucleicAcid.code)
    microbiology.blood_bkv_dna_copiesmicrobiology.blood_bkv_dna_copiesDMv1.2 column microbiology.blood_bkv_dna_copies: Blood BKV-DNA (copies/ml).~49345-2(MicrobiologyViralLoad.code)
    microbiology.urine_bkv_dnamicrobiology.urine_bkv_dnaDMv1.2 column microbiology.urine_bkv_dna: Urine BKV-DNA.~33978-8(MicrobiologyNucleicAcid.code)
    microbiology.bkv_dna_kidney_biopsymicrobiology.bkv_dna_kidney_biopsyDMv1.2 column microbiology.bkv_dna_kidney_biopsy: BKV-DNA on kidney biopsy.~47251-4(MicrobiologyNucleicAcid.code. Generic-specimen code; Observation.specimen identifies the kidney biopsy tissue.)
    microbiology.bkv_fish_kidney_biopsymicrobiology.bkv_fish_kidney_biopsyDMv1.2 column microbiology.bkv_fish_kidney_biopsy: BKV FISH on kidney biopsy.~bkv-dna-ish-tissue(MicrobiologyNucleicAcid.code. LOINC has no in-situ hybridisation code for BK virus in tissue.)
    microbiology.blood_colturemicrobiology.blood_coltureDMv1.2 column microbiology.blood_colture: Blood colture.~600-7(MicrobiologyCulture.code)
    microbiology.urine_colturemicrobiology.urine_coltureDMv1.2 column microbiology.urine_colture: Urine colture.~630-4(MicrobiologyCulture.code)
    microbiology.other_positivitymicrobiology.other_positivityDMv1.2 column microbiology.other_positivity: Other positivity.
    microbiology.ebv_hepatitis_livermicrobiology.ebv_hepatitis_liverDMv1.2 column microbiology.ebv_hepatitis_liver: EBV-Hepatitis on liver.~ebv-hepatitis-liver(MicrobiologyDiagnosis.code. MicrobiologyDiagnosis (Condition); false → the same Condition with verificationStatus #refuted; blank → no Condition.)
    microbiology.evidence_bkvanmicrobiology.evidence_bkvanDMv1.2 column microbiology.evidence_bkvan: Histological evidence of BKVAN.~evidence-bkvan(MicrobiologyDiagnosis.code. MicrobiologyDiagnosis (Condition); No → the same Condition with verificationStatus #refuted; Unknown or blank → no Condition.)

Source1

{
  "resourceType": "ValueSet",
  "id": "dm-microbiology-variable-vs",
  "text": {
    "status": "extensions",
    "div": "<!-- snip (see above) -->"
  },
  "url": "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/ValueSet/dm-microbiology-variable-vs",
  "version": "0.1.0-ci-build",
  "name": "DmMicrobiologyVariableVS",
  "title": "PROTECT-CHILD DM microbiology variables",
  "status": "draft",
  "experimental": true,
  "date": "2026-09-28T06:51:47+00:00",
  "publisher": "Protect Child",
  "contact": [
    {
      "name": "Protect Child",
      "telecom": [
        {
          "system": "url",
          "value": "https://protect-child.eu/"
        }
      ]
    }
  ],
  "description": "The columns of the DMv1.2 microbiology table, as DmVariableCS codes. Source value set of ConceptMap DmMicrobiologyToFhir.",
  "compose": {
    "include": [
      {
        "system": "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/dm-variable-cs",
        "concept": [
          {
            "code": "microbiology.ebv_dna"
          },
          {
            "code": "microbiology.ebv_dna_copies"
          },
          {
            "code": "microbiology.ebv_igm_anti_ea"
          },
          {
            "code": "microbiology.ebv_igm_anti_vca"
          },
          {
            "code": "microbiology.ebv_igg_anti_vca"
          },
          {
            "code": "microbiology.ebv_igg_ebna"
          },
          {
            "code": "microbiology.cmv_dna"
          },
          {
            "code": "microbiology.cmv_dna_copies"
          },
          {
            "code": "microbiology.cmv_igm"
          },
          {
            "code": "microbiology.cmv_igg"
          },
          {
            "code": "microbiology.parvovirus_b19_dna"
          },
          {
            "code": "microbiology.parvovirus_b19_dna_copies"
          },
          {
            "code": "microbiology.parvovirus_b19_igg"
          },
          {
            "code": "microbiology.parvovirus_b19_igm"
          },
          {
            "code": "microbiology.hsv_igg"
          },
          {
            "code": "microbiology.hsv_igm"
          },
          {
            "code": "microbiology.adenovirus_igg"
          },
          {
            "code": "microbiology.adenovirus_igm"
          },
          {
            "code": "microbiology.blood_adenovirus_dna"
          },
          {
            "code": "microbiology.blood_adenovirus_dna_copies"
          },
          {
            "code": "microbiology.vzv_igg"
          },
          {
            "code": "microbiology.vzv_igm"
          },
          {
            "code": "microbiology.blood_bkv_dna"
          },
          {
            "code": "microbiology.blood_bkv_dna_copies"
          },
          {
            "code": "microbiology.urine_bkv_dna"
          },
          {
            "code": "microbiology.bkv_dna_kidney_biopsy"
          },
          {
            "code": "microbiology.bkv_fish_kidney_biopsy"
          },
          {
            "code": "microbiology.blood_colture"
          },
          {
            "code": "microbiology.urine_colture"
          },
          {
            "code": "microbiology.other_positivity"
          },
          {
            "code": "microbiology.ebv_hepatitis_liver"
          },
          {
            "code": "microbiology.evidence_bkvan"
          }
        ]
      }
    ]
  }
}