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Source1

{
  "resourceType": "ConceptMap",
  "id": "dm-lab-test-to-omop",
  "text": {
    "status": "generated",
    "div": "<!-- snip (see above) -->"
  },
  "url": "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/ConceptMap/dm-lab-test-to-omop",
  "version": "0.1.0-ci-build",
  "name": "DmLabTestToOmop",
  "title": "DM lab_test → OMOP",
  "status": "draft",
  "experimental": false,
  "date": "2026-09-28T06:51:47+00:00",
  "publisher": "Protect Child",
  "contact": [
    {
      "name": "Protect Child",
      "telecom": [
        {
          "system": "url",
          "value": "https://protect-child.eu/"
        }
      ]
    }
  ],
  "description": "The OMOP concepts for each column of the DMv1.2 lab_test table, from the DM → FHIR → OMOP crosswalk. Each target's comment names the OMOP CDM field it fills. `equivalent`: the column's own concept; `narrower`: one of several concepts the column's values map to; `relatedto`: a value, unit or qualifier concept. Concept IDs of 2000000000 and above are PROTECT-CHILD custom concepts (CodeSystem ProtectChildOmopVocabulary).",
  "group": [
    {
      "source": "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/dm-variable-cs",
      "target": "https://fhir-terminology.ohdsi.org",
      "element": [
        {
          "code": "lab_test.name",
          "target": [
            {
              "code": "3016723",
              "display": "Creatinine [Mass/volume] in Serum or Plasma",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "3020564",
              "display": "Creatinine [Moles/volume] in Serum or Plasma",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "3024561",
              "display": "Albumin [Mass/volume] in Serum or Plasma",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "3034485",
              "display": "Albumin/Creatinine [Mass Ratio] in Urine",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "46236949",
              "display": "Alanine aminotransferase [Enzymatic activity/volume] in Serum, Plasma or Blood",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "3023183",
              "display": "Ammonium ion [Moles/volume] in Plasma",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "3022592",
              "display": "Ammonium ion [Moles/volume] in Arterial blood",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "3013721",
              "display": "Aspartate aminotransferase [Enzymatic activity/volume] in Serum or Plasma",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "3026217",
              "display": "Bile acid [Mass/volume] in Serum",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "3028110",
              "display": "Bile acid [Moles/volume] in Serum or Plasma",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "3006916",
              "display": "Magnesium [Mass/volume] in Blood",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "3033836",
              "display": "Magnesium [Moles/volume] in Blood",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "3010421",
              "display": "pH of Blood",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "3024232",
              "display": "Phosphate [Mass/volume] in Blood",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "3018913",
              "display": "Phosphate [Moles/volume] in Blood",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "3000620",
              "display": "Complement C3 [Mass/volume] in Serum or Plasma",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "3017766",
              "display": "Complement C4 [Mass/volume] in Serum or Plasma",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "3032503",
              "display": "Calcium [Mass/volume] in Blood",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "3005162",
              "display": "Calcium [Moles/volume] in Blood",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "3019900",
              "display": "Cholesterol [Moles/volume] in Serum or Plasma",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "3027114",
              "display": "Cholesterol [Mass/volume] in Serum or Plasma",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "3015185",
              "display": "Cholinesterase [Enzymatic activity/volume] in Blood",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "3022907",
              "display": "Direct antiglobulin test.polyspecific reagent [Presence] on Red Blood Cells",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "3029719",
              "display": "Indirect antiglobulin test.unspecified reagent [Presence] in Serum or Plasma",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "46236952",
              "display": "Glomerular filtration rate [Volume Rate/Area] in Serum, Plasma or Blood by Creatinine-based formula (MDRD)/1.73 sq M",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "3030366",
              "display": "Cystatin C [Mass/volume] in Serum or Plasma",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "3027597",
              "display": "Bilirubin.direct [Mass/volume] in Serum or Plasma",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "3028638",
              "display": "Bilirubin.direct [Moles/volume] in Serum or Plasma",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "3037110",
              "display": "Fasting glucose [Mass/volume] in Serum or Plasma",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "3018251",
              "display": "Fasting glucose [Moles/volume] in Serum or Plasma",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "36304157",
              "display": "Cystatin C and Glomerular filtration rate by Cystatin C-based formula panel - Serum or Plasma",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "3026910",
              "display": "Gamma glutamyl transferase [Enzymatic activity/volume] in Serum or Plasma",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "3004501",
              "display": "Glucose [Mass/volume] in Serum or Plasma",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "3013826",
              "display": "Glucose [Moles/volume] in Serum or Plasma",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "3012336",
              "display": "Haptoglobin [Mass/volume] in Serum or Plasma",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "3034639",
              "display": "Hemoglobin A1c [Mass/volume] in Blood",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "3004410",
              "display": "Hemoglobin A1c/Hemoglobin.total in Blood",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "3006576",
              "display": "Bicarbonate [Moles/volume] in Blood",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "3023314",
              "display": "Hematocrit [Volume Fraction] of Blood by Automated count",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "3000963",
              "display": "Hemoglobin [Mass/volume] in Blood",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "3007164",
              "display": "IgA [Mass/volume] in Serum or Plasma",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "3005719",
              "display": "IgG [Mass/volume] in Serum or Plasma",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "3028026",
              "display": "IgM [Mass/volume] in Serum or Plasma",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "3007242",
              "display": "Bilirubin.indirect [Moles/volume] in Serum or Plasma",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "3007359",
              "display": "Bilirubin.indirect [Mass/volume] in Serum or Plasma",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "3022217",
              "display": "INR in Platelet poor plasma by Coagulation assay",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "40762125",
              "display": "Lactate [Mass/volume] in Blood",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "3047181",
              "display": "Lactate [Moles/volume] in Blood",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "3016436",
              "display": "Lactate dehydrogenase [Enzymatic activity/volume] in Serum or Plasma",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "3018095",
              "display": "Leukocytes [#/volume] in Blood",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "4234268",
              "display": "ANA measurement",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary SNOMED."
            },
            {
              "code": "4179789",
              "display": "Smooth muscle antibody measurement",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary SNOMED."
            },
            {
              "code": "4015457",
              "display": "Antibody to mitochondria measurement",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary SNOMED."
            },
            {
              "code": "37170564",
              "display": "LKM 1 (liver-kidney microsomal 1) antibody arbitrary concentration in serum",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary SNOMED."
            },
            {
              "code": "44790054",
              "display": "Anti liver cytosol type 1 antibody level",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary SNOMED."
            },
            {
              "code": "44790056",
              "display": "Anti soluble liver antigen/liver-pancreas antibody level",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary SNOMED."
            },
            {
              "code": "2000000049",
              "display": "Anti-gp210 antibody level",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary PROTECT-CHILD."
            },
            {
              "code": "2000000050",
              "display": "Anti-sp100 antibody level",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary PROTECT-CHILD."
            },
            {
              "code": "4189395",
              "display": "Perinuclear neutrophil cytoplasmic antibody level",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary SNOMED."
            },
            {
              "code": "3019198",
              "display": "Lymphocytes [#/volume] in Blood",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "37399254",
              "display": "Percentage lymphocytes",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary SNOMED."
            },
            {
              "code": "3017732",
              "display": "Neutrophils [#/volume] in Blood",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "37398605",
              "display": "Percentage neutrophils",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary SNOMED."
            },
            {
              "code": "3007090",
              "display": "Glucose tolerance [Interpretation] in Serum or Plasma",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "3007461",
              "display": "Platelets [#/volume] in Blood",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "3005456",
              "display": "Potassium [Moles/volume] in Blood",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "21490733",
              "display": "Potassium [Mass/volume] in Blood",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "3045462",
              "display": "Protein/Creatinine [Ratio] in Urine",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "3034426",
              "display": "Prothrombin time (PT)",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "4141751",
              "display": "Parathyroid hormone measurement",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary SNOMED."
            },
            {
              "code": "37170628",
              "display": "Total protein mass concentration in urine",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary SNOMED."
            },
            {
              "code": "3026361",
              "display": "Erythrocytes [#/volume] in Blood",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "37208985",
              "display": "Schistocyte count in blood by automated count",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary SNOMED."
            },
            {
              "code": "3016293",
              "display": "Bicarbonate [Moles/volume] in Serum or Plasma",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "3019550",
              "display": "Sodium [Moles/volume] in Serum or Plasma",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "3000285",
              "display": "Sodium [Moles/volume] in Blood",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "3028833",
              "display": "Bilirubin.total [Mass/volume] in Blood",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "40757494",
              "display": "Bilirubin.total [Moles/volume] in Blood",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "4119650",
              "display": "Total protein measurement",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary SNOMED."
            },
            {
              "code": "3022038",
              "display": "Triglyceride [Mass/volume] in Blood",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "42868692",
              "display": "Triglyceride [Moles/volume] in Blood",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "1469591",
              "display": "Tubular cells [#/volume] in Urine sediment",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "3034204",
              "display": "Urea [Mass/volume] in Serum or Plasma",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "3020779",
              "display": "Urea [Moles/volume] in Serum or Plasma",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "3037556",
              "display": "Urate [Mass/volume] in Serum or Plasma",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "3026493",
              "display": "Urate [Moles/volume] in Serum or Plasma",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "3006661",
              "display": "Calcium [Mass/volume] in Urine",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "3018133",
              "display": "Calcium [Moles/volume] in Urine",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "3007733",
              "display": "Chloride [Moles/volume] in Urine",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "3017250",
              "display": "Creatinine [Mass/volume] in Urine",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "3009508",
              "display": "Creatinine [Moles/volume] in Urine",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "3026729",
              "display": "Phosphate [Mass/volume] in Urine",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "3022229",
              "display": "Phosphate [Moles/volume] in Urine",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "3016038",
              "display": "Potassium [Moles/volume] in Urine",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "3002582",
              "display": "Erythrocytes [#/volume] in Urine",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "3003181",
              "display": "Sodium [Moles/volume] in Urine",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "4308739",
              "display": "Vitamin D measurement",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary SNOMED."
            }
          ]
        }
      ]
    }
  ]
}