FHIRsmith: ConceptMap/ConceptMap-dm-lab-result-to-omop.json

FHIR IG analytics

Package	hl7.eu.fhir.protect-child
Resource Type	ConceptMap
Id	ConceptMap-dm-lab-result-to-omop.json
FHIR Version	R4
Source	https://build.fhir.org/ig/hl7-eu/protect-child/ConceptMap-dm-lab-result-to-omop.html
URL	https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/ConceptMap/dm-lab-result-to-omop
Version	0.1.0-ci-build
Status	draft
Date	2026-09-28T06:51:47+00:00
Name	DmLabResultToOmop
Title	DM lab_result → OMOP
Realm	eu
Authority	hl7
Description	The OMOP concepts for each column of the DMv1.2 lab_result table, from the DM → FHIR → OMOP crosswalk. Each target's comment names the OMOP CDM field it fills. `equivalent`: the column's own concept; `narrower`: one of several concepts the column's values map to; `relatedto`: a value, unit or qualifier concept. Concept IDs of 2000000000 and above are PROTECT-CHILD custom concepts (CodeSystem ProtectChildOmopVocabulary).

Resources that use this resource

No resources found

Resources that this resource uses

CodeSystem
hl7.terminology.r4b#6.0.2	fhir-terminology.ohdsi.org	OHDSI Standardized Vocabularies
hl7.eu.fhir.protect-child#current	dm-variable-cs	PROTECT-CHILD Data Model Variables

Narrative

Note: links and images are rebased to the (stated) source

Generated Narrative: ConceptMap dm-lab-result-to-omop

This mapping does not specify any particular context of use.

Mapping from PROTECT-CHILD Data Model Variables to OHDSI Standardized Vocabularies

Source Concept Details

Relationship

Target Concept Details

Comment

Codes from PROTECT-CHILD Data Model Variables

Codes from OHDSI Standardized Vocabularies

lab_result.unit

lab_result.unit

8840

milligram per deciliter

OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM.

8749

micromole per liter

OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM.

720870

milliliter per minute per 1.73 square meter

OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM.

8751

milligram per liter

OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM.

9490

equivalent per liter

OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM.

8753

millimole per liter

OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM.

8725

nanogram per liter

OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM.

8736

nanomole per liter

OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM.

8645

unit per liter

OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM.

8554

percent

OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM.

8636

gram per liter

OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM.

8523

ratio

OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM.

8713

gram per deciliter

OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM.

8734

trillion per liter

OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM.

9442

million per liter

OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM.

8810

kilounit per liter

OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM.

8555

second

OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM.

8784

cells per microliter

OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM.

8909

milligram per 24 hours

OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM.

9565

milligram per milligram

OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM.

44777612

milligram per millimole

OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM.

8723

milligram per gram

OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM.

Source1

{
  "resourceType": "ConceptMap",
  "id": "dm-lab-result-to-omop",
  "text": {
    "status": "generated",
    "div": "<!-- snip (see above) -->"
  },
  "url": "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/ConceptMap/dm-lab-result-to-omop",
  "version": "0.1.0-ci-build",
  "name": "DmLabResultToOmop",
  "title": "DM lab_result → OMOP",
  "status": "draft",
  "experimental": false,
  "date": "2026-09-28T06:51:47+00:00",
  "publisher": "Protect Child",
  "contact": [
    {
      "name": "Protect Child",
      "telecom": [
        {
          "system": "url",
          "value": "https://protect-child.eu/"
        }
      ]
    }
  ],
  "description": "The OMOP concepts for each column of the DMv1.2 lab_result table, from the DM → FHIR → OMOP crosswalk. Each target's comment names the OMOP CDM field it fills. `equivalent`: the column's own concept; `narrower`: one of several concepts the column's values map to; `relatedto`: a value, unit or qualifier concept. Concept IDs of 2000000000 and above are PROTECT-CHILD custom concepts (CodeSystem ProtectChildOmopVocabulary).",
  "group": [
    {
      "source": "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/dm-variable-cs",
      "target": "https://fhir-terminology.ohdsi.org",
      "element": [
        {
          "code": "lab_result.unit",
          "target": [
            {
              "code": "8840",
              "display": "milligram per deciliter",
              "equivalence": "relatedto",
              "comment": "OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM."
            },
            {
              "code": "8749",
              "display": "micromole per liter",
              "equivalence": "relatedto",
              "comment": "OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM."
            },
            {
              "code": "720870",
              "display": "milliliter per minute per 1.73 square meter",
              "equivalence": "relatedto",
              "comment": "OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM."
            },
            {
              "code": "8751",
              "display": "milligram per liter",
              "equivalence": "relatedto",
              "comment": "OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM."
            },
            {
              "code": "9490",
              "display": "equivalent per liter",
              "equivalence": "relatedto",
              "comment": "OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM."
            },
            {
              "code": "8753",
              "display": "millimole per liter",
              "equivalence": "relatedto",
              "comment": "OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM."
            },
            {
              "code": "8725",
              "display": "nanogram per liter",
              "equivalence": "relatedto",
              "comment": "OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM."
            },
            {
              "code": "8736",
              "display": "nanomole per liter",
              "equivalence": "relatedto",
              "comment": "OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM."
            },
            {
              "code": "8645",
              "display": "unit per liter",
              "equivalence": "relatedto",
              "comment": "OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM."
            },
            {
              "code": "8554",
              "display": "percent",
              "equivalence": "relatedto",
              "comment": "OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM."
            },
            {
              "code": "8636",
              "display": "gram per liter",
              "equivalence": "relatedto",
              "comment": "OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM."
            },
            {
              "code": "8523",
              "display": "ratio",
              "equivalence": "relatedto",
              "comment": "OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM."
            },
            {
              "code": "8713",
              "display": "gram per deciliter",
              "equivalence": "relatedto",
              "comment": "OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM."
            },
            {
              "code": "8734",
              "display": "trillion per liter",
              "equivalence": "relatedto",
              "comment": "OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM."
            },
            {
              "code": "9442",
              "display": "million per liter",
              "equivalence": "relatedto",
              "comment": "OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM."
            },
            {
              "code": "8810",
              "display": "kilounit per liter",
              "equivalence": "relatedto",
              "comment": "OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM."
            },
            {
              "code": "8555",
              "display": "second",
              "equivalence": "relatedto",
              "comment": "OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM."
            },
            {
              "code": "8784",
              "display": "cells per microliter",
              "equivalence": "relatedto",
              "comment": "OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM."
            },
            {
              "code": "8909",
              "display": "milligram per 24 hours",
              "equivalence": "relatedto",
              "comment": "OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM."
            },
            {
              "code": "9565",
              "display": "milligram per milligram",
              "equivalence": "relatedto",
              "comment": "OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM."
            },
            {
              "code": "44777612",
              "display": "milligram per millimole",
              "equivalence": "relatedto",
              "comment": "OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM."
            },
            {
              "code": "8723",
              "display": "milligram per gram",
              "equivalence": "relatedto",
              "comment": "OMOP MEASUREMENT.unit_concept_id; vocabulary UCUM."
            }
          ]
        }
      ]
    }
  ]
}