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Packagehl7.eu.fhir.protect-child
Resource TypeConceptMap
IdConceptMap-dm-immunological-data-to-omop.json
FHIR VersionR4
Sourcehttps://build.fhir.org/ig/hl7-eu/protect-child/ConceptMap-dm-immunological-data-to-omop.html
URLhttps://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/ConceptMap/dm-immunological-data-to-omop
Version0.1.0-ci-build
Statusdraft
Date2026-09-28T06:51:47+00:00
NameDmImmunologicalDataToOmop
TitleDM immunological_data → OMOP
Realmeu
Authorityhl7
DescriptionThe OMOP concepts for each column of the DMv1.2 immunological_data table, from the DM → FHIR → OMOP crosswalk. Each target's comment names the OMOP CDM field it fills. `equivalent`: the column's own concept; `narrower`: one of several concepts the column's values map to; `relatedto`: a value, unit or qualifier concept. Concept IDs of 2000000000 and above are PROTECT-CHILD custom concepts (CodeSystem ProtectChildOmopVocabulary).

Resources that use this resource

No resources found

Resources that this resource uses

CodeSystem
hl7.terminology.r4b#6.0.2fhir-terminology.ohdsi.orgOHDSI Standardized Vocabularies
hl7.eu.fhir.protect-child#currentdm-variable-csPROTECT-CHILD Data Model Variables

Narrative

Note: links and images are rebased to the (stated) source

Generated Narrative: ConceptMap dm-immunological-data-to-omop

This mapping does not specify any particular context of use.


Mapping from PROTECT-CHILD Data Model Variables to OHDSI Standardized Vocabularies

Source Concept DetailsRelationshipTarget Concept DetailsComment
Codes from PROTECT-CHILD Data Model VariablesCodes from OHDSI Standardized Vocabularies
immunological_data.blood_groupimmunological_data.blood_groupis equivalent to3002529ABO group [Type] in BloodOMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.
is related to36308333Group AOMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.
is related to36309587Group BOMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.
is related to36311267Group ABOMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.
is related to36309715Group OOMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.
immunological_data.rh_factorimmunological_data.rh_factoris equivalent to3003310Rh [Type] in BloodOMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.
is related to45884084PositiveOMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.
is related to45878583NegativeOMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.
immunological_data.hla_a_1immunological_data.hla_a_1is equivalent to3024471HLA-A [Type]OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.
immunological_data.hla_a_2immunological_data.hla_a_2is equivalent to3024471HLA-A [Type]OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.
immunological_data.hla_b_1immunological_data.hla_b_1is equivalent to3025311HLA-B [Type]OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.
immunological_data.hla_b_2immunological_data.hla_b_2is equivalent to3025311HLA-B [Type]OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.
immunological_data.hla_c_1immunological_data.hla_c_1is equivalent to3026777HLA-C [Type]OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.
immunological_data.hla_c_2immunological_data.hla_c_2is equivalent to3026777HLA-C [Type]OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.
immunological_data.hla_drb1_1immunological_data.hla_drb1_1is equivalent to40760417HLA-DRB1 [Type]OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.
immunological_data.hla_drb1_2immunological_data.hla_drb1_2is equivalent to40760417HLA-DRB1 [Type]OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.
immunological_data.hla_dp_1immunological_data.hla_dp_1is equivalent to3013862HLA-DP [Type]OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.
immunological_data.hla_dp_2immunological_data.hla_dp_2is equivalent to3013862HLA-DP [Type]OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.
immunological_data.hla_dqb1_1immunological_data.hla_dqb1_1is equivalent to3038881HLA-DQB1 [Type]OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.
immunological_data.hla_dqb1_2immunological_data.hla_dqb1_2is equivalent to3038881HLA-DQB1 [Type]OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.
immunological_data.mfiimmunological_data.mfinarrower2000000051MFI category: Weak Reaction (500-2k)OMOP MEASUREMENT.measurement_concept_id; vocabulary PROTECT-CHILD.
narrower2000000052MFI category: Moderate Reaction (2k-4k)OMOP MEASUREMENT.measurement_concept_id; vocabulary PROTECT-CHILD.
narrower2000000053MFI category: Strong Reaction (>4k)OMOP MEASUREMENT.measurement_concept_id; vocabulary PROTECT-CHILD.
immunological_data.banff_categoryimmunological_data.banff_categorynarrower2000000044Banff Classification of Allograft Pathology: Category 1OMOP MEASUREMENT.measurement_concept_id; vocabulary PROTECT-CHILD.
narrower2000000045Banff Classification of Allograft Pathology: Category 2OMOP MEASUREMENT.measurement_concept_id; vocabulary PROTECT-CHILD.
narrower2000000046Banff Classification of Allograft Pathology: Category 3OMOP MEASUREMENT.measurement_concept_id; vocabulary PROTECT-CHILD.
narrower2000000047Banff Classification of Allograft Pathology: Category 4OMOP MEASUREMENT.measurement_concept_id; vocabulary PROTECT-CHILD.
narrower2000000048Banff Classification of Allograft Pathology: Category 5OMOP MEASUREMENT.measurement_concept_id; vocabulary PROTECT-CHILD.
immunological_data.ihc_if_c4dimmunological_data.ihc_if_c4dis equivalent to4015468Complement C4d measurementOMOP MEASUREMENT.measurement_concept_id; vocabulary SNOMED.
is related to9189NegativeOMOP MEASUREMENT.value_as_concept_id; vocabulary SNOMED.
is related to9191PositiveOMOP MEASUREMENT.value_as_concept_id; vocabulary SNOMED.
immunological_data.ancaimmunological_data.ancais equivalent to3009628Neutrophil cytoplasmic Ab [Presence] in SerumOMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.
is related to45884084PositiveOMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.
is related to45878583NegativeOMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.
immunological_data.anti_hla_antibodiesimmunological_data.anti_hla_antibodiesis equivalent to3035516HLA Ab [Presence]OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC.
is related to45884084PositiveOMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.
is related to45878583NegativeOMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC.

Source1

{
  "resourceType": "ConceptMap",
  "id": "dm-immunological-data-to-omop",
  "text": {
    "status": "generated",
    "div": "<!-- snip (see above) -->"
  },
  "url": "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/ConceptMap/dm-immunological-data-to-omop",
  "version": "0.1.0-ci-build",
  "name": "DmImmunologicalDataToOmop",
  "title": "DM immunological_data → OMOP",
  "status": "draft",
  "experimental": false,
  "date": "2026-09-28T06:51:47+00:00",
  "publisher": "Protect Child",
  "contact": [
    {
      "name": "Protect Child",
      "telecom": [
        {
          "system": "url",
          "value": "https://protect-child.eu/"
        }
      ]
    }
  ],
  "description": "The OMOP concepts for each column of the DMv1.2 immunological_data table, from the DM → FHIR → OMOP crosswalk. Each target's comment names the OMOP CDM field it fills. `equivalent`: the column's own concept; `narrower`: one of several concepts the column's values map to; `relatedto`: a value, unit or qualifier concept. Concept IDs of 2000000000 and above are PROTECT-CHILD custom concepts (CodeSystem ProtectChildOmopVocabulary).",
  "group": [
    {
      "source": "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/dm-variable-cs",
      "target": "https://fhir-terminology.ohdsi.org",
      "element": [
        {
          "code": "immunological_data.blood_group",
          "target": [
            {
              "code": "3002529",
              "display": "ABO group [Type] in Blood",
              "equivalence": "equivalent",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "36308333",
              "display": "Group A",
              "equivalence": "relatedto",
              "comment": "OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."
            },
            {
              "code": "36309587",
              "display": "Group B",
              "equivalence": "relatedto",
              "comment": "OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."
            },
            {
              "code": "36311267",
              "display": "Group AB",
              "equivalence": "relatedto",
              "comment": "OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."
            },
            {
              "code": "36309715",
              "display": "Group O",
              "equivalence": "relatedto",
              "comment": "OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."
            }
          ]
        },
        {
          "code": "immunological_data.rh_factor",
          "target": [
            {
              "code": "3003310",
              "display": "Rh [Type] in Blood",
              "equivalence": "equivalent",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "45884084",
              "display": "Positive",
              "equivalence": "relatedto",
              "comment": "OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."
            },
            {
              "code": "45878583",
              "display": "Negative",
              "equivalence": "relatedto",
              "comment": "OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."
            }
          ]
        },
        {
          "code": "immunological_data.hla_a_1",
          "target": [
            {
              "code": "3024471",
              "display": "HLA-A [Type]",
              "equivalence": "equivalent",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            }
          ]
        },
        {
          "code": "immunological_data.hla_a_2",
          "target": [
            {
              "code": "3024471",
              "display": "HLA-A [Type]",
              "equivalence": "equivalent",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            }
          ]
        },
        {
          "code": "immunological_data.hla_b_1",
          "target": [
            {
              "code": "3025311",
              "display": "HLA-B [Type]",
              "equivalence": "equivalent",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            }
          ]
        },
        {
          "code": "immunological_data.hla_b_2",
          "target": [
            {
              "code": "3025311",
              "display": "HLA-B [Type]",
              "equivalence": "equivalent",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            }
          ]
        },
        {
          "code": "immunological_data.hla_c_1",
          "target": [
            {
              "code": "3026777",
              "display": "HLA-C [Type]",
              "equivalence": "equivalent",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            }
          ]
        },
        {
          "code": "immunological_data.hla_c_2",
          "target": [
            {
              "code": "3026777",
              "display": "HLA-C [Type]",
              "equivalence": "equivalent",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            }
          ]
        },
        {
          "code": "immunological_data.hla_drb1_1",
          "target": [
            {
              "code": "40760417",
              "display": "HLA-DRB1 [Type]",
              "equivalence": "equivalent",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            }
          ]
        },
        {
          "code": "immunological_data.hla_drb1_2",
          "target": [
            {
              "code": "40760417",
              "display": "HLA-DRB1 [Type]",
              "equivalence": "equivalent",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            }
          ]
        },
        {
          "code": "immunological_data.hla_dp_1",
          "target": [
            {
              "code": "3013862",
              "display": "HLA-DP [Type]",
              "equivalence": "equivalent",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            }
          ]
        },
        {
          "code": "immunological_data.hla_dp_2",
          "target": [
            {
              "code": "3013862",
              "display": "HLA-DP [Type]",
              "equivalence": "equivalent",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            }
          ]
        },
        {
          "code": "immunological_data.hla_dqb1_1",
          "target": [
            {
              "code": "3038881",
              "display": "HLA-DQB1 [Type]",
              "equivalence": "equivalent",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            }
          ]
        },
        {
          "code": "immunological_data.hla_dqb1_2",
          "target": [
            {
              "code": "3038881",
              "display": "HLA-DQB1 [Type]",
              "equivalence": "equivalent",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            }
          ]
        },
        {
          "code": "immunological_data.mfi",
          "target": [
            {
              "code": "2000000051",
              "display": "MFI category: Weak Reaction (500-2k)",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary PROTECT-CHILD."
            },
            {
              "code": "2000000052",
              "display": "MFI category: Moderate Reaction (2k-4k)",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary PROTECT-CHILD."
            },
            {
              "code": "2000000053",
              "display": "MFI category: Strong Reaction (>4k)",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary PROTECT-CHILD."
            }
          ]
        },
        {
          "code": "immunological_data.banff_category",
          "target": [
            {
              "code": "2000000044",
              "display": "Banff Classification of Allograft Pathology: Category 1",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary PROTECT-CHILD."
            },
            {
              "code": "2000000045",
              "display": "Banff Classification of Allograft Pathology: Category 2",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary PROTECT-CHILD."
            },
            {
              "code": "2000000046",
              "display": "Banff Classification of Allograft Pathology: Category 3",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary PROTECT-CHILD."
            },
            {
              "code": "2000000047",
              "display": "Banff Classification of Allograft Pathology: Category 4",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary PROTECT-CHILD."
            },
            {
              "code": "2000000048",
              "display": "Banff Classification of Allograft Pathology: Category 5",
              "equivalence": "narrower",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary PROTECT-CHILD."
            }
          ]
        },
        {
          "code": "immunological_data.ihc_if_c4d",
          "target": [
            {
              "code": "4015468",
              "display": "Complement C4d measurement",
              "equivalence": "equivalent",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary SNOMED."
            },
            {
              "code": "9189",
              "display": "Negative",
              "equivalence": "relatedto",
              "comment": "OMOP MEASUREMENT.value_as_concept_id; vocabulary SNOMED."
            },
            {
              "code": "9191",
              "display": "Positive",
              "equivalence": "relatedto",
              "comment": "OMOP MEASUREMENT.value_as_concept_id; vocabulary SNOMED."
            }
          ]
        },
        {
          "code": "immunological_data.anca",
          "target": [
            {
              "code": "3009628",
              "display": "Neutrophil cytoplasmic Ab [Presence] in Serum",
              "equivalence": "equivalent",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "45884084",
              "display": "Positive",
              "equivalence": "relatedto",
              "comment": "OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."
            },
            {
              "code": "45878583",
              "display": "Negative",
              "equivalence": "relatedto",
              "comment": "OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."
            }
          ]
        },
        {
          "code": "immunological_data.anti_hla_antibodies",
          "target": [
            {
              "code": "3035516",
              "display": "HLA Ab [Presence]",
              "equivalence": "equivalent",
              "comment": "OMOP MEASUREMENT.measurement_concept_id; vocabulary LOINC."
            },
            {
              "code": "45884084",
              "display": "Positive",
              "equivalence": "relatedto",
              "comment": "OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."
            },
            {
              "code": "45878583",
              "display": "Negative",
              "equivalence": "relatedto",
              "comment": "OMOP MEASUREMENT.value_as_concept_id; vocabulary LOINC."
            }
          ]
        }
      ]
    }
  ]
}