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Packagehl7.eu.fhir.protect-child
Resource TypeConceptMap
IdConceptMap-dm-clinical-event-type-to-omop.json
FHIR VersionR4
Sourcehttps://build.fhir.org/ig/hl7-eu/protect-child/ConceptMap-dm-clinical-event-type-to-omop.html
URLhttps://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/ConceptMap/dm-clinical-event-type-to-omop
Version0.1.0-ci-build
Statusdraft
Date2026-09-28T06:51:47+00:00
NameDmClinicalEventTypeToOmop
TitleDM clinical_event_type → OMOP
Realmeu
Authorityhl7
DescriptionThe OMOP concepts for each column of the DMv1.2 clinical_event_type table, from the DM → FHIR → OMOP crosswalk. Each target's comment names the OMOP CDM field it fills. `equivalent`: the column's own concept; `narrower`: one of several concepts the column's values map to; `relatedto`: a value, unit or qualifier concept. Concept IDs of 2000000000 and above are PROTECT-CHILD custom concepts (CodeSystem ProtectChildOmopVocabulary).

Resources that use this resource

No resources found


Resources that this resource uses

CodeSystem
hl7.terminology.r4b#6.0.2fhir-terminology.ohdsi.orgOHDSI Standardized Vocabularies
hl7.eu.fhir.protect-child#currentdm-variable-csPROTECT-CHILD Data Model Variables

Narrative

Note: links and images are rebased to the (stated) source

Generated Narrative: ConceptMap dm-clinical-event-type-to-omop

This mapping does not specify any particular context of use.


Mapping from PROTECT-CHILD Data Model Variables to OHDSI Standardized Vocabularies

Source Concept DetailsRelationshipTarget Concept DetailsComment
Codes from PROTECT-CHILD Data Model VariablesCodes from OHDSI Standardized Vocabularies
clinical_event_type.nameclinical_event_type.namenarrower2000000029AlloimmunizationOMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary PROTECT-CHILD.
narrower4043343Disorder of bile ductOMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED.
narrower37017585BK virus nephropathyOMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED.
narrower4340390Chronic hepatic failureOMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED.
narrower4198610Chronic rejection of liver transplantOMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED.
narrower198185Chronic renal failureOMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED.
narrower440032Cytomegalovirus infectionOMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED.
narrower4138908Delayed renal graft functionOMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED.
narrower4032294Primary non-function of renal transplantOMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED.
narrower313800Thrombotic microangiopathyOMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED.
narrower201820Diabetes mellitusOMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED.
narrower4151240Transplanted organ failureOMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED.
narrower316866Hypertensive disorderOMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED.
narrower4128369Renal transplant rejectionOMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED.
narrower2000000023Liver early allograft dysfunctionOMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary PROTECT-CHILD.
narrower4326594Abnormal liver functionOMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED.
narrower4341657Liver transplant rejectionOMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED.
narrower321876Disorder of capillariesOMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED.
narrower2000000015mTOR inhibitors poisoningOMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary PROTECT-CHILD.
narrower2000000014Mycophenolate poisoningOMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary PROTECT-CHILD.
narrower42872891Posterior reversible encephalopathy syndromeOMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED.
narrower435514Lymphoproliferative disorder following transplantationOMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED.
narrower2000000024Relapse of primary immunomediated diseaseOMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary PROTECT-CHILD.
narrower45765696Calcineurin inhibitor poisoningOMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED.
narrower44809014Urological complication of renal transplantOMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED.
narrower197444Vascular complication of medical careOMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED.
narrower4192056Abnormal renal functionOMOP OBSERVATION.observation_concept_id; vocabulary SNOMED.
narrower4306655DeathOMOP OBSERVATION.observation_concept_id; vocabulary SNOMED.

Source1

{
  "resourceType": "ConceptMap",
  "id": "dm-clinical-event-type-to-omop",
  "text": {
    "status": "generated",
    "div": "<!-- snip (see above) -->"
  },
  "url": "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/ConceptMap/dm-clinical-event-type-to-omop",
  "version": "0.1.0-ci-build",
  "name": "DmClinicalEventTypeToOmop",
  "title": "DM clinical_event_type → OMOP",
  "status": "draft",
  "experimental": false,
  "date": "2026-09-28T06:51:47+00:00",
  "publisher": "Protect Child",
  "contact": [
    {
      "name": "Protect Child",
      "telecom": [
        {
          "system": "url",
          "value": "https://protect-child.eu/"
        }
      ]
    }
  ],
  "description": "The OMOP concepts for each column of the DMv1.2 clinical_event_type table, from the DM → FHIR → OMOP crosswalk. Each target's comment names the OMOP CDM field it fills. `equivalent`: the column's own concept; `narrower`: one of several concepts the column's values map to; `relatedto`: a value, unit or qualifier concept. Concept IDs of 2000000000 and above are PROTECT-CHILD custom concepts (CodeSystem ProtectChildOmopVocabulary).",
  "group": [
    {
      "source": "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/dm-variable-cs",
      "target": "https://fhir-terminology.ohdsi.org",
      "element": [
        {
          "code": "clinical_event_type.name",
          "target": [
            {
              "code": "2000000029",
              "display": "Alloimmunization",
              "equivalence": "narrower",
              "comment": "OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary PROTECT-CHILD."
            },
            {
              "code": "4043343",
              "display": "Disorder of bile duct",
              "equivalence": "narrower",
              "comment": "OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED."
            },
            {
              "code": "37017585",
              "display": "BK virus nephropathy",
              "equivalence": "narrower",
              "comment": "OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED."
            },
            {
              "code": "4340390",
              "display": "Chronic hepatic failure",
              "equivalence": "narrower",
              "comment": "OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED."
            },
            {
              "code": "4198610",
              "display": "Chronic rejection of liver transplant",
              "equivalence": "narrower",
              "comment": "OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED."
            },
            {
              "code": "198185",
              "display": "Chronic renal failure",
              "equivalence": "narrower",
              "comment": "OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED."
            },
            {
              "code": "440032",
              "display": "Cytomegalovirus infection",
              "equivalence": "narrower",
              "comment": "OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED."
            },
            {
              "code": "4138908",
              "display": "Delayed renal graft function",
              "equivalence": "narrower",
              "comment": "OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED."
            },
            {
              "code": "4032294",
              "display": "Primary non-function of renal transplant",
              "equivalence": "narrower",
              "comment": "OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED."
            },
            {
              "code": "313800",
              "display": "Thrombotic microangiopathy",
              "equivalence": "narrower",
              "comment": "OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED."
            },
            {
              "code": "201820",
              "display": "Diabetes mellitus",
              "equivalence": "narrower",
              "comment": "OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED."
            },
            {
              "code": "4151240",
              "display": "Transplanted organ failure",
              "equivalence": "narrower",
              "comment": "OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED."
            },
            {
              "code": "316866",
              "display": "Hypertensive disorder",
              "equivalence": "narrower",
              "comment": "OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED."
            },
            {
              "code": "4128369",
              "display": "Renal transplant rejection",
              "equivalence": "narrower",
              "comment": "OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED."
            },
            {
              "code": "2000000023",
              "display": "Liver early allograft dysfunction",
              "equivalence": "narrower",
              "comment": "OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary PROTECT-CHILD."
            },
            {
              "code": "4326594",
              "display": "Abnormal liver function",
              "equivalence": "narrower",
              "comment": "OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED."
            },
            {
              "code": "4341657",
              "display": "Liver transplant rejection",
              "equivalence": "narrower",
              "comment": "OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED."
            },
            {
              "code": "321876",
              "display": "Disorder of capillaries",
              "equivalence": "narrower",
              "comment": "OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED."
            },
            {
              "code": "2000000015",
              "display": "mTOR inhibitors poisoning",
              "equivalence": "narrower",
              "comment": "OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary PROTECT-CHILD."
            },
            {
              "code": "2000000014",
              "display": "Mycophenolate poisoning",
              "equivalence": "narrower",
              "comment": "OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary PROTECT-CHILD."
            },
            {
              "code": "42872891",
              "display": "Posterior reversible encephalopathy syndrome",
              "equivalence": "narrower",
              "comment": "OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED."
            },
            {
              "code": "435514",
              "display": "Lymphoproliferative disorder following transplantation",
              "equivalence": "narrower",
              "comment": "OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED."
            },
            {
              "code": "2000000024",
              "display": "Relapse of primary immunomediated disease",
              "equivalence": "narrower",
              "comment": "OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary PROTECT-CHILD."
            },
            {
              "code": "45765696",
              "display": "Calcineurin inhibitor poisoning",
              "equivalence": "narrower",
              "comment": "OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED."
            },
            {
              "code": "44809014",
              "display": "Urological complication of renal transplant",
              "equivalence": "narrower",
              "comment": "OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED."
            },
            {
              "code": "197444",
              "display": "Vascular complication of medical care",
              "equivalence": "narrower",
              "comment": "OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED."
            },
            {
              "code": "4192056",
              "display": "Abnormal renal function",
              "equivalence": "narrower",
              "comment": "OMOP OBSERVATION.observation_concept_id; vocabulary SNOMED."
            },
            {
              "code": "4306655",
              "display": "Death",
              "equivalence": "narrower",
              "comment": "OMOP OBSERVATION.observation_concept_id; vocabulary SNOMED."
            }
          ]
        }
      ]
    }
  ]
}