FHIR © HL7.org  |  FHIRsmith 4.0.1  |  Server Home  |  XIG Home  |  XIG Stats  | 

FHIR IG analytics

Packagehl7.eu.fhir.protect-child
Resource TypeConceptMap
IdConceptMap-dm-clinical-event-to-omop.json
FHIR VersionR4
Sourcehttps://build.fhir.org/ig/hl7-eu/protect-child/ConceptMap-dm-clinical-event-to-omop.html
URLhttps://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/ConceptMap/dm-clinical-event-to-omop
Version0.1.0-ci-build
Statusdraft
Date2026-09-28T06:51:47+00:00
NameDmClinicalEventToOmop
TitleDM clinical_event → OMOP
Realmeu
Authorityhl7
DescriptionThe OMOP concepts for each column of the DMv1.2 clinical_event table, from the DM → FHIR → OMOP crosswalk. Each target's comment names the OMOP CDM field it fills. `equivalent`: the column's own concept; `narrower`: one of several concepts the column's values map to; `relatedto`: a value, unit or qualifier concept. Concept IDs of 2000000000 and above are PROTECT-CHILD custom concepts (CodeSystem ProtectChildOmopVocabulary).

Resources that use this resource

No resources found


Resources that this resource uses

CodeSystem
hl7.terminology.r4b#6.0.2fhir-terminology.ohdsi.orgOHDSI Standardized Vocabularies
hl7.eu.fhir.protect-child#currentdm-variable-csPROTECT-CHILD Data Model Variables

Narrative

Note: links and images are rebased to the (stated) source

Generated Narrative: ConceptMap dm-clinical-event-to-omop

This mapping does not specify any particular context of use.


Mapping from PROTECT-CHILD Data Model Variables to OHDSI Standardized Vocabularies

Source Concept DetailsRelationshipTarget Concept DetailsComment
Codes from PROTECT-CHILD Data Model VariablesCodes from OHDSI Standardized Vocabularies
clinical_event.dgfclinical_event.dgfis equivalent to2000000032Delayed graft functionOMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary PROTECT-CHILD.
clinical_event.vascular_complication_typeclinical_event.vascular_complication_typenarrower4223098Hepatic artery thrombosisOMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED.
narrower317003Compression of veinOMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED.
narrower199837Portal vein thrombosisOMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED.
clinical_event.episodes_aki_after_ltxclinical_event.episodes_aki_after_ltxis equivalent to197320Acute kidney injuryOMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED.
clinical_event.histologic_evidence_cni_toxicityclinical_event.histologic_evidence_cni_toxicityis equivalent to2000000035Histological evidence of CNI toxicityOMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary PROTECT-CHILD.
clinical_event.hypoxic_ischemic_event_pltxclinical_event.hypoxic_ischemic_event_pltxis equivalent to2000000026Hypoxic ischemic eventOMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary PROTECT-CHILD.
clinical_event.dialysis_typeclinical_event.dialysis_typenarrower4120120HemodialysisOMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED.
narrower4324124Peritoneal dialysisOMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED.
clinical_event.treatment_adherenceclinical_event.treatment_adherenceis equivalent to36031908Adherence to treatmentOMOP OBSERVATION.observation_concept_id; vocabulary LOINC.
is related to36032717Adherent to treatmentOMOP OBSERVATION.value_as_concept_id; vocabulary LOINC.
is related to36032471Not adherent to treatmentOMOP OBSERVATION.value_as_concept_id; vocabulary LOINC.
clinical_event.date_entry_transplant_listclinical_event.date_entry_transplant_listis equivalent to43020581On waiting list for organ transplantOMOP OBSERVATION.observation_concept_id; vocabulary —.

Source1

{
  "resourceType": "ConceptMap",
  "id": "dm-clinical-event-to-omop",
  "text": {
    "status": "generated",
    "div": "<!-- snip (see above) -->"
  },
  "url": "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/ConceptMap/dm-clinical-event-to-omop",
  "version": "0.1.0-ci-build",
  "name": "DmClinicalEventToOmop",
  "title": "DM clinical_event → OMOP",
  "status": "draft",
  "experimental": false,
  "date": "2026-09-28T06:51:47+00:00",
  "publisher": "Protect Child",
  "contact": [
    {
      "name": "Protect Child",
      "telecom": [
        {
          "system": "url",
          "value": "https://protect-child.eu/"
        }
      ]
    }
  ],
  "description": "The OMOP concepts for each column of the DMv1.2 clinical_event table, from the DM → FHIR → OMOP crosswalk. Each target's comment names the OMOP CDM field it fills. `equivalent`: the column's own concept; `narrower`: one of several concepts the column's values map to; `relatedto`: a value, unit or qualifier concept. Concept IDs of 2000000000 and above are PROTECT-CHILD custom concepts (CodeSystem ProtectChildOmopVocabulary).",
  "group": [
    {
      "source": "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/dm-variable-cs",
      "target": "https://fhir-terminology.ohdsi.org",
      "element": [
        {
          "code": "clinical_event.dgf",
          "target": [
            {
              "code": "2000000032",
              "display": "Delayed graft function",
              "equivalence": "equivalent",
              "comment": "OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary PROTECT-CHILD."
            }
          ]
        },
        {
          "code": "clinical_event.vascular_complication_type",
          "target": [
            {
              "code": "4223098",
              "display": "Hepatic artery thrombosis",
              "equivalence": "narrower",
              "comment": "OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED."
            },
            {
              "code": "317003",
              "display": "Compression of vein",
              "equivalence": "narrower",
              "comment": "OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED."
            },
            {
              "code": "199837",
              "display": "Portal vein thrombosis",
              "equivalence": "narrower",
              "comment": "OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED."
            }
          ]
        },
        {
          "code": "clinical_event.episodes_aki_after_ltx",
          "target": [
            {
              "code": "197320",
              "display": "Acute kidney injury",
              "equivalence": "equivalent",
              "comment": "OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED."
            }
          ]
        },
        {
          "code": "clinical_event.histologic_evidence_cni_toxicity",
          "target": [
            {
              "code": "2000000035",
              "display": "Histological evidence of CNI toxicity",
              "equivalence": "equivalent",
              "comment": "OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary PROTECT-CHILD."
            }
          ]
        },
        {
          "code": "clinical_event.hypoxic_ischemic_event_pltx",
          "target": [
            {
              "code": "2000000026",
              "display": "Hypoxic ischemic event",
              "equivalence": "equivalent",
              "comment": "OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary PROTECT-CHILD."
            }
          ]
        },
        {
          "code": "clinical_event.dialysis_type",
          "target": [
            {
              "code": "4120120",
              "display": "Hemodialysis",
              "equivalence": "narrower",
              "comment": "OMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED."
            },
            {
              "code": "4324124",
              "display": "Peritoneal dialysis",
              "equivalence": "narrower",
              "comment": "OMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED."
            }
          ]
        },
        {
          "code": "clinical_event.treatment_adherence",
          "target": [
            {
              "code": "36031908",
              "display": "Adherence to treatment",
              "equivalence": "equivalent",
              "comment": "OMOP OBSERVATION.observation_concept_id; vocabulary LOINC."
            },
            {
              "code": "36032717",
              "display": "Adherent to treatment",
              "equivalence": "relatedto",
              "comment": "OMOP OBSERVATION.value_as_concept_id; vocabulary LOINC."
            },
            {
              "code": "36032471",
              "display": "Not adherent to treatment",
              "equivalence": "relatedto",
              "comment": "OMOP OBSERVATION.value_as_concept_id; vocabulary LOINC."
            }
          ]
        },
        {
          "code": "clinical_event.date_entry_transplant_list",
          "target": [
            {
              "code": "43020581",
              "display": "On waiting list for organ transplant",
              "equivalence": "equivalent",
              "comment": "OMOP OBSERVATION.observation_concept_id; vocabulary —."
            }
          ]
        }
      ]
    }
  ]
}