FHIR IG analytics| Package | hl7.eu.fhir.protect-child |
| Resource Type | ConceptMap |
| Id | ConceptMap-dm-clinical-event-to-omop.json |
| FHIR Version | R4 |
| Source | https://build.fhir.org/ig/hl7-eu/protect-child/ConceptMap-dm-clinical-event-to-omop.html |
| URL | https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/ConceptMap/dm-clinical-event-to-omop |
| Version | 0.1.0-ci-build |
| Status | draft |
| Date | 2026-09-28T06:51:47+00:00 |
| Name | DmClinicalEventToOmop |
| Title | DM clinical_event → OMOP |
| Realm | eu |
| Authority | hl7 |
| Description | The OMOP concepts for each column of the DMv1.2 clinical_event table, from the DM → FHIR → OMOP crosswalk. Each target's comment names the OMOP CDM field it fills. `equivalent`: the column's own concept; `narrower`: one of several concepts the column's values map to; `relatedto`: a value, unit or qualifier concept. Concept IDs of 2000000000 and above are PROTECT-CHILD custom concepts (CodeSystem ProtectChildOmopVocabulary). |
No resources found
| CodeSystem | ||
| hl7.terminology.r4b#6.0.2 | fhir-terminology.ohdsi.org | OHDSI Standardized Vocabularies |
| hl7.eu.fhir.protect-child#current | dm-variable-cs | PROTECT-CHILD Data Model Variables |
Note: links and images are rebased to the (stated) source
Generated Narrative: ConceptMap dm-clinical-event-to-omop
This mapping does not specify any particular context of use.
Mapping from PROTECT-CHILD Data Model Variables to OHDSI Standardized Vocabularies
| Source Concept Details | Relationship | Target Concept Details | Comment | ||
| Codes from PROTECT-CHILD Data Model Variables | Codes from OHDSI Standardized Vocabularies | ||||
| clinical_event.dgf | clinical_event.dgf | is equivalent to | 2000000032 | Delayed graft function | OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary PROTECT-CHILD. |
| clinical_event.vascular_complication_type | clinical_event.vascular_complication_type | narrower | 4223098 | Hepatic artery thrombosis | OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED. |
| narrower | 317003 | Compression of vein | OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED. | ||
| narrower | 199837 | Portal vein thrombosis | OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED. | ||
| clinical_event.episodes_aki_after_ltx | clinical_event.episodes_aki_after_ltx | is equivalent to | 197320 | Acute kidney injury | OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED. |
| clinical_event.histologic_evidence_cni_toxicity | clinical_event.histologic_evidence_cni_toxicity | is equivalent to | 2000000035 | Histological evidence of CNI toxicity | OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary PROTECT-CHILD. |
| clinical_event.hypoxic_ischemic_event_pltx | clinical_event.hypoxic_ischemic_event_pltx | is equivalent to | 2000000026 | Hypoxic ischemic event | OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary PROTECT-CHILD. |
| clinical_event.dialysis_type | clinical_event.dialysis_type | narrower | 4120120 | Hemodialysis | OMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED. |
| narrower | 4324124 | Peritoneal dialysis | OMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED. | ||
| clinical_event.treatment_adherence | clinical_event.treatment_adherence | is equivalent to | 36031908 | Adherence to treatment | OMOP OBSERVATION.observation_concept_id; vocabulary LOINC. |
| is related to | 36032717 | Adherent to treatment | OMOP OBSERVATION.value_as_concept_id; vocabulary LOINC. | ||
| is related to | 36032471 | Not adherent to treatment | OMOP OBSERVATION.value_as_concept_id; vocabulary LOINC. | ||
| clinical_event.date_entry_transplant_list | clinical_event.date_entry_transplant_list | is equivalent to | 43020581 | On waiting list for organ transplant | OMOP OBSERVATION.observation_concept_id; vocabulary —. |
{
"resourceType": "ConceptMap",
"id": "dm-clinical-event-to-omop",
"text": {
"status": "generated",
"div": "<!-- snip (see above) -->"
},
"url": "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/ConceptMap/dm-clinical-event-to-omop",
"version": "0.1.0-ci-build",
"name": "DmClinicalEventToOmop",
"title": "DM clinical_event → OMOP",
"status": "draft",
"experimental": false,
"date": "2026-09-28T06:51:47+00:00",
"publisher": "Protect Child",
"contact": [
{
"name": "Protect Child",
"telecom": [
{
"system": "url",
"value": "https://protect-child.eu/"
}
]
}
],
"description": "The OMOP concepts for each column of the DMv1.2 clinical_event table, from the DM → FHIR → OMOP crosswalk. Each target's comment names the OMOP CDM field it fills. `equivalent`: the column's own concept; `narrower`: one of several concepts the column's values map to; `relatedto`: a value, unit or qualifier concept. Concept IDs of 2000000000 and above are PROTECT-CHILD custom concepts (CodeSystem ProtectChildOmopVocabulary).",
"group": [
{
"source": "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/dm-variable-cs",
"target": "https://fhir-terminology.ohdsi.org",
"element": [
{
"code": "clinical_event.dgf",
"target": [
{
"code": "2000000032",
"display": "Delayed graft function",
"equivalence": "equivalent",
"comment": "OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary PROTECT-CHILD."
}
]
},
{
"code": "clinical_event.vascular_complication_type",
"target": [
{
"code": "4223098",
"display": "Hepatic artery thrombosis",
"equivalence": "narrower",
"comment": "OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED."
},
{
"code": "317003",
"display": "Compression of vein",
"equivalence": "narrower",
"comment": "OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED."
},
{
"code": "199837",
"display": "Portal vein thrombosis",
"equivalence": "narrower",
"comment": "OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED."
}
]
},
{
"code": "clinical_event.episodes_aki_after_ltx",
"target": [
{
"code": "197320",
"display": "Acute kidney injury",
"equivalence": "equivalent",
"comment": "OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED."
}
]
},
{
"code": "clinical_event.histologic_evidence_cni_toxicity",
"target": [
{
"code": "2000000035",
"display": "Histological evidence of CNI toxicity",
"equivalence": "equivalent",
"comment": "OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary PROTECT-CHILD."
}
]
},
{
"code": "clinical_event.hypoxic_ischemic_event_pltx",
"target": [
{
"code": "2000000026",
"display": "Hypoxic ischemic event",
"equivalence": "equivalent",
"comment": "OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary PROTECT-CHILD."
}
]
},
{
"code": "clinical_event.dialysis_type",
"target": [
{
"code": "4120120",
"display": "Hemodialysis",
"equivalence": "narrower",
"comment": "OMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED."
},
{
"code": "4324124",
"display": "Peritoneal dialysis",
"equivalence": "narrower",
"comment": "OMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED."
}
]
},
{
"code": "clinical_event.treatment_adherence",
"target": [
{
"code": "36031908",
"display": "Adherence to treatment",
"equivalence": "equivalent",
"comment": "OMOP OBSERVATION.observation_concept_id; vocabulary LOINC."
},
{
"code": "36032717",
"display": "Adherent to treatment",
"equivalence": "relatedto",
"comment": "OMOP OBSERVATION.value_as_concept_id; vocabulary LOINC."
},
{
"code": "36032471",
"display": "Not adherent to treatment",
"equivalence": "relatedto",
"comment": "OMOP OBSERVATION.value_as_concept_id; vocabulary LOINC."
}
]
},
{
"code": "clinical_event.date_entry_transplant_list",
"target": [
{
"code": "43020581",
"display": "On waiting list for organ transplant",
"equivalence": "equivalent",
"comment": "OMOP OBSERVATION.observation_concept_id; vocabulary —."
}
]
}
]
}
]
}