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Packagehl7.eu.fhir.protect-child
Resource TypeConceptMap
IdConceptMap-dm-bio-sample-to-omop.json
FHIR VersionR4
Sourcehttps://build.fhir.org/ig/hl7-eu/protect-child/ConceptMap-dm-bio-sample-to-omop.html
URLhttps://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/ConceptMap/dm-bio-sample-to-omop
Version0.1.0-ci-build
Statusdraft
Date2026-09-28T06:51:47+00:00
NameDmBioSampleToOmop
TitleDM bio_sample → OMOP
Realmeu
Authorityhl7
DescriptionThe OMOP concepts for each column of the DMv1.2 bio_sample table, from the DM → FHIR → OMOP crosswalk. Each target's comment names the OMOP CDM field it fills. `equivalent`: the column's own concept; `narrower`: one of several concepts the column's values map to; `relatedto`: a value, unit or qualifier concept. Concept IDs of 2000000000 and above are PROTECT-CHILD custom concepts (CodeSystem ProtectChildOmopVocabulary).

Resources that use this resource

No resources found


Resources that this resource uses

CodeSystem
hl7.terminology.r4b#6.0.2fhir-terminology.ohdsi.orgOHDSI Standardized Vocabularies
hl7.eu.fhir.protect-child#currentdm-variable-csPROTECT-CHILD Data Model Variables

Narrative

Note: links and images are rebased to the (stated) source

Generated Narrative: ConceptMap dm-bio-sample-to-omop

This mapping does not specify any particular context of use.


Mapping from PROTECT-CHILD Data Model Variables to OHDSI Standardized Vocabularies

Source CodeRelationshipTarget CodeComment
bio_sample.collection_dateis equivalent to4048506 (Specimen)OMOP SPECIMEN.specimen_concept_id; vocabulary SNOMED.

Source1

{
  "resourceType": "ConceptMap",
  "id": "dm-bio-sample-to-omop",
  "text": {
    "status": "generated",
    "div": "<!-- snip (see above) -->"
  },
  "url": "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/ConceptMap/dm-bio-sample-to-omop",
  "version": "0.1.0-ci-build",
  "name": "DmBioSampleToOmop",
  "title": "DM bio_sample → OMOP",
  "status": "draft",
  "experimental": false,
  "date": "2026-09-28T06:51:47+00:00",
  "publisher": "Protect Child",
  "contact": [
    {
      "name": "Protect Child",
      "telecom": [
        {
          "system": "url",
          "value": "https://protect-child.eu/"
        }
      ]
    }
  ],
  "description": "The OMOP concepts for each column of the DMv1.2 bio_sample table, from the DM → FHIR → OMOP crosswalk. Each target's comment names the OMOP CDM field it fills. `equivalent`: the column's own concept; `narrower`: one of several concepts the column's values map to; `relatedto`: a value, unit or qualifier concept. Concept IDs of 2000000000 and above are PROTECT-CHILD custom concepts (CodeSystem ProtectChildOmopVocabulary).",
  "group": [
    {
      "source": "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/dm-variable-cs",
      "target": "https://fhir-terminology.ohdsi.org",
      "element": [
        {
          "code": "bio_sample.collection_date",
          "target": [
            {
              "code": "4048506",
              "display": "Specimen",
              "equivalence": "equivalent",
              "comment": "OMOP SPECIMEN.specimen_concept_id; vocabulary SNOMED."
            }
          ]
        }
      ]
    }
  ]
}