FHIR IG analytics| Package | hl7.eu.fhir.protect-child |
| Resource Type | ConceptMap |
| Id | ConceptMap-dm-bio-sample-to-omop.json |
| FHIR Version | R4 |
| Source | https://build.fhir.org/ig/hl7-eu/protect-child/ConceptMap-dm-bio-sample-to-omop.html |
| URL | https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/ConceptMap/dm-bio-sample-to-omop |
| Version | 0.1.0-ci-build |
| Status | draft |
| Date | 2026-09-28T06:51:47+00:00 |
| Name | DmBioSampleToOmop |
| Title | DM bio_sample → OMOP |
| Realm | eu |
| Authority | hl7 |
| Description | The OMOP concepts for each column of the DMv1.2 bio_sample table, from the DM → FHIR → OMOP crosswalk. Each target's comment names the OMOP CDM field it fills. `equivalent`: the column's own concept; `narrower`: one of several concepts the column's values map to; `relatedto`: a value, unit or qualifier concept. Concept IDs of 2000000000 and above are PROTECT-CHILD custom concepts (CodeSystem ProtectChildOmopVocabulary). |
No resources found
| CodeSystem | ||
| hl7.terminology.r4b#6.0.2 | fhir-terminology.ohdsi.org | OHDSI Standardized Vocabularies |
| hl7.eu.fhir.protect-child#current | dm-variable-cs | PROTECT-CHILD Data Model Variables |
Note: links and images are rebased to the (stated) source
Generated Narrative: ConceptMap dm-bio-sample-to-omop
This mapping does not specify any particular context of use.
Mapping from PROTECT-CHILD Data Model Variables to OHDSI Standardized Vocabularies
| Source Code | Relationship | Target Code | Comment |
| bio_sample.collection_date | is equivalent to | 4048506 (Specimen) | OMOP SPECIMEN.specimen_concept_id; vocabulary SNOMED. |
{
"resourceType": "ConceptMap",
"id": "dm-bio-sample-to-omop",
"text": {
"status": "generated",
"div": "<!-- snip (see above) -->"
},
"url": "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/ConceptMap/dm-bio-sample-to-omop",
"version": "0.1.0-ci-build",
"name": "DmBioSampleToOmop",
"title": "DM bio_sample → OMOP",
"status": "draft",
"experimental": false,
"date": "2026-09-28T06:51:47+00:00",
"publisher": "Protect Child",
"contact": [
{
"name": "Protect Child",
"telecom": [
{
"system": "url",
"value": "https://protect-child.eu/"
}
]
}
],
"description": "The OMOP concepts for each column of the DMv1.2 bio_sample table, from the DM → FHIR → OMOP crosswalk. Each target's comment names the OMOP CDM field it fills. `equivalent`: the column's own concept; `narrower`: one of several concepts the column's values map to; `relatedto`: a value, unit or qualifier concept. Concept IDs of 2000000000 and above are PROTECT-CHILD custom concepts (CodeSystem ProtectChildOmopVocabulary).",
"group": [
{
"source": "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/dm-variable-cs",
"target": "https://fhir-terminology.ohdsi.org",
"element": [
{
"code": "bio_sample.collection_date",
"target": [
{
"code": "4048506",
"display": "Specimen",
"equivalence": "equivalent",
"comment": "OMOP SPECIMEN.specimen_concept_id; vocabulary SNOMED."
}
]
}
]
}
]
}