FHIR IG analytics| Package | hl7.eu.fhir.protect-child |
| Resource Type | CodeSystem |
| Id | CodeSystem-protect-child-omop-vocabulary.json |
| FHIR Version | R4 |
| Source | https://build.fhir.org/ig/hl7-eu/protect-child/CodeSystem-protect-child-omop-vocabulary.html |
| URL | https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/protect-child-omop-vocabulary |
| Version | 0.1.0-ci-build |
| Status | draft |
| Date | 2026-09-28T06:51:47+00:00 |
| Name | ProtectChildOmopVocabulary |
| Title | PROTECT-CHILD OMOP custom concepts |
| Realm | eu |
| Authority | hl7 |
| Description | The study's own OMOP concepts (vocabulary_id PROTECT-CHILD, concept_id 2000000000 and above), for data-model values that have no standard concept in Athena. Codes are the OMOP concept_id; the ConceptMaps cite them under the OMOP system as they would appear in a PROTECT-CHILD OMOP instance. |
| Content | complete |
No resources found
No resources found
Note: links and images are rebased to the (stated) source
Generated Narrative: CodeSystem protect-child-omop-vocabulary
Properties
This code system defines the following properties for its concepts
| Name | Code | Type | Description |
| domain | domain | string | OMOP domain_id |
| class | class | string | OMOP concept_class_id |
Concepts
This case-sensitive code system https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/protect-child-omop-vocabulary defines the following codes:
FHIR
FHIRsmith{
"resourceType": "CodeSystem",
"id": "protect-child-omop-vocabulary",
"text": {
"status": "generated",
"div": "<!-- snip (see above) -->"
},
"url": "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/protect-child-omop-vocabulary",
"version": "0.1.0-ci-build",
"name": "ProtectChildOmopVocabulary",
"title": "PROTECT-CHILD OMOP custom concepts",
"status": "draft",
"experimental": false,
"date": "2026-09-28T06:51:47+00:00",
"publisher": "Protect Child",
"contact": [
{
"name": "Protect Child",
"telecom": [
{
"system": "url",
"value": "https://protect-child.eu/"
}
]
}
],
"description": "The study's own OMOP concepts (vocabulary_id PROTECT-CHILD, concept_id 2000000000 and above), for data-model values that have no standard concept in Athena. Codes are the OMOP concept_id; the ConceptMaps cite them under the OMOP system as they would appear in a PROTECT-CHILD OMOP instance.",
"caseSensitive": true,
"content": "complete",
"count": 43,
"property": [
{
"code": "domain",
"description": "OMOP domain_id",
"type": "string"
},
{
"code": "class",
"description": "OMOP concept_class_id",
"type": "string"
}
],
"concept": [
{
"code": "2000000007",
"display": "has organ donor",
"definition": "PROTECT-CHILD custom OMOP concept (Relationship domain, Relationship): has organ donor.",
"property": [
{
"code": "domain",
"valueString": "Relationship"
},
{
"code": "class",
"valueString": "Relationship"
}
]
},
{
"code": "2000000008",
"display": "is organ donor for",
"definition": "PROTECT-CHILD custom OMOP concept (Relationship domain, Relationship): is organ donor for.",
"property": [
{
"code": "domain",
"valueString": "Relationship"
},
{
"code": "class",
"valueString": "Relationship"
}
]
},
{
"code": "2000000009",
"display": "Graft-to-recipient weight ratio",
"definition": "PROTECT-CHILD custom OMOP concept (Measurement domain, Observable Entity): Graft-to-recipient weight ratio.",
"property": [
{
"code": "domain",
"valueString": "Measurement"
},
{
"code": "class",
"valueString": "Observable Entity"
}
]
},
{
"code": "2000000010",
"display": "Donor–recipient vessel mismatch",
"definition": "PROTECT-CHILD custom OMOP concept (Observation domain, Clinical Observation): Donor–recipient vessel mismatch.",
"property": [
{
"code": "domain",
"valueString": "Observation"
},
{
"code": "class",
"valueString": "Clinical Observation"
}
]
},
{
"code": "2000000016",
"display": "Type of donor",
"definition": "PROTECT-CHILD custom OMOP concept (Observation domain, Clinical Observation): Type of donor.",
"property": [
{
"code": "domain",
"valueString": "Observation"
},
{
"code": "class",
"valueString": "Clinical Observation"
}
]
},
{
"code": "2000000017",
"display": "Duct-to-Duct Anastomosis",
"definition": "PROTECT-CHILD custom OMOP concept (Procedure domain, Procedure): Duct-to-Duct Anastomosis.",
"property": [
{
"code": "domain",
"valueString": "Procedure"
},
{
"code": "class",
"valueString": "Procedure"
}
]
},
{
"code": "2000000018",
"display": "Hepaticocholedochostomy",
"definition": "PROTECT-CHILD custom OMOP concept (Procedure domain, Procedure): Hepaticocholedochostomy.",
"property": [
{
"code": "domain",
"valueString": "Procedure"
},
{
"code": "class",
"valueString": "Procedure"
}
]
},
{
"code": "2000000019",
"display": "Bilioenteric Anastomosis",
"definition": "PROTECT-CHILD custom OMOP concept (Procedure domain, Procedure): Bilioenteric Anastomosis.",
"property": [
{
"code": "domain",
"valueString": "Procedure"
},
{
"code": "class",
"valueString": "Procedure"
}
]
},
{
"code": "2000000031",
"display": "Liver ischemia",
"definition": "PROTECT-CHILD custom OMOP concept (Condition domain, Disorder): Liver ischemia.",
"property": [
{
"code": "domain",
"valueString": "Condition"
},
{
"code": "class",
"valueString": "Disorder"
}
]
},
{
"code": "2000000028",
"display": "Histological evidence of monoclonal proliferation",
"definition": "PROTECT-CHILD custom OMOP concept (Observation domain, Clinical Observation): Histological evidence of monoclonal proliferation.",
"property": [
{
"code": "domain",
"valueString": "Observation"
},
{
"code": "class",
"valueString": "Clinical Observation"
}
]
},
{
"code": "2000000033",
"display": "Histological evidence of MMF-related enteropathy",
"definition": "PROTECT-CHILD custom OMOP concept (Condition domain, Clinical Finding): Histological evidence of MMF-related enteropathy.",
"property": [
{
"code": "domain",
"valueString": "Condition"
},
{
"code": "class",
"valueString": "Clinical Finding"
}
]
},
{
"code": "2000000037",
"display": "Histological evidence on biospy",
"definition": "PROTECT-CHILD custom OMOP concept (Observation domain, Clinical Observation): Histological evidence on biospy.",
"property": [
{
"code": "domain",
"valueString": "Observation"
},
{
"code": "class",
"valueString": "Clinical Observation"
}
]
},
{
"code": "2000000038",
"display": "Systolic blood pressure load",
"definition": "PROTECT-CHILD custom OMOP concept (Measurement domain, Observable Entity): Systolic blood pressure load.",
"property": [
{
"code": "domain",
"valueString": "Measurement"
},
{
"code": "class",
"valueString": "Observable Entity"
}
]
},
{
"code": "2000000039",
"display": "Diastolic blood pressure load",
"definition": "PROTECT-CHILD custom OMOP concept (Measurement domain, Observable Entity): Diastolic blood pressure load.",
"property": [
{
"code": "domain",
"valueString": "Measurement"
},
{
"code": "class",
"valueString": "Observable Entity"
}
]
},
{
"code": "2000000040",
"display": "Systolic blood pressure Dip",
"definition": "PROTECT-CHILD custom OMOP concept (Measurement domain, Observable Entity): Systolic blood pressure Dip.",
"property": [
{
"code": "domain",
"valueString": "Measurement"
},
{
"code": "class",
"valueString": "Observable Entity"
}
]
},
{
"code": "2000000041",
"display": "Diastolic blood pressure load",
"definition": "PROTECT-CHILD custom OMOP concept (Measurement domain, Observable Entity): Diastolic blood pressure load.",
"property": [
{
"code": "domain",
"valueString": "Measurement"
},
{
"code": "class",
"valueString": "Observable Entity"
}
]
},
{
"code": "2000000023",
"display": "Liver early allograft dysfunction",
"definition": "PROTECT-CHILD custom OMOP concept (Condition domain, Clinical Finding): Liver early allograft dysfunction.",
"property": [
{
"code": "domain",
"valueString": "Condition"
},
{
"code": "class",
"valueString": "Clinical Finding"
}
]
},
{
"code": "2000000014",
"display": "Mycophenolate poisoning",
"definition": "PROTECT-CHILD custom OMOP concept (Condition domain, Disorder): Mycophenolate poisoning.",
"property": [
{
"code": "domain",
"valueString": "Condition"
},
{
"code": "class",
"valueString": "Disorder"
}
]
},
{
"code": "2000000015",
"display": "mTOR inhibitors poisoning",
"definition": "PROTECT-CHILD custom OMOP concept (Condition domain, Disorder): mTOR inhibitors poisoning.",
"property": [
{
"code": "domain",
"valueString": "Condition"
},
{
"code": "class",
"valueString": "Disorder"
}
]
},
{
"code": "2000000024",
"display": "Relapse of primary immunomediated disease",
"definition": "PROTECT-CHILD custom OMOP concept (Condition domain, Clinical Finding): Relapse of primary immunomediated disease.",
"property": [
{
"code": "domain",
"valueString": "Condition"
},
{
"code": "class",
"valueString": "Clinical Finding"
}
]
},
{
"code": "2000000029",
"display": "Alloimmunization",
"definition": "PROTECT-CHILD custom OMOP concept (Condition domain, Clinical Finding): Alloimmunization.",
"property": [
{
"code": "domain",
"valueString": "Condition"
},
{
"code": "class",
"valueString": "Clinical Finding"
}
]
},
{
"code": "2000000042",
"display": "Primary diagnosis confirmed by histology",
"definition": "PROTECT-CHILD custom OMOP concept (Observation domain, Clinical Finding): Primary diagnosis confirmed by histology.",
"property": [
{
"code": "domain",
"valueString": "Observation"
},
{
"code": "class",
"valueString": "Clinical Finding"
}
]
},
{
"code": "2000000002",
"display": "Pre-transplant visit",
"definition": "PROTECT-CHILD custom OMOP concept (Observation domain, Clinical Finding): Pre-transplant visit.",
"property": [
{
"code": "domain",
"valueString": "Observation"
},
{
"code": "class",
"valueString": "Clinical Finding"
}
]
},
{
"code": "2000000003",
"display": "Clinical event visit",
"definition": "PROTECT-CHILD custom OMOP concept (Observation domain, Clinical Finding): Clinical event visit.",
"property": [
{
"code": "domain",
"valueString": "Observation"
},
{
"code": "class",
"valueString": "Clinical Finding"
}
]
},
{
"code": "2000000004",
"display": "Termination visit",
"definition": "PROTECT-CHILD custom OMOP concept (Observation domain, Clinical Finding): Termination visit.",
"property": [
{
"code": "domain",
"valueString": "Observation"
},
{
"code": "class",
"valueString": "Clinical Finding"
}
]
},
{
"code": "2000000043",
"display": "Ongoing medication",
"definition": "PROTECT-CHILD custom OMOP concept (Observation domain, Clinical Finding): Ongoing medication.",
"property": [
{
"code": "domain",
"valueString": "Observation"
},
{
"code": "class",
"valueString": "Clinical Finding"
}
]
},
{
"code": "2000000013",
"display": "Measurement of trough drug concentration",
"definition": "PROTECT-CHILD custom OMOP concept (Measurement domain, Procedure): Measurement of trough drug concentration.",
"property": [
{
"code": "domain",
"valueString": "Measurement"
},
{
"code": "class",
"valueString": "Procedure"
}
]
},
{
"code": "2000000022",
"display": "Measured AUC for [drug]",
"definition": "PROTECT-CHILD custom OMOP concept (Measurement domain, Lab Test): Measured AUC for [drug].",
"property": [
{
"code": "domain",
"valueString": "Measurement"
},
{
"code": "class",
"valueString": "Lab Test"
}
]
},
{
"code": "2000000044",
"display": "Banff Classification of Allograft Pathology: Category 1",
"definition": "PROTECT-CHILD custom OMOP concept (Measurement domain, Staging / Scales): Banff Classification of Allograft Pathology: Category 1.",
"property": [
{
"code": "domain",
"valueString": "Measurement"
},
{
"code": "class",
"valueString": "Staging / Scales"
}
]
},
{
"code": "2000000045",
"display": "Banff Classification of Allograft Pathology: Category 2",
"definition": "PROTECT-CHILD custom OMOP concept (Measurement domain, Staging / Scales): Banff Classification of Allograft Pathology: Category 2.",
"property": [
{
"code": "domain",
"valueString": "Measurement"
},
{
"code": "class",
"valueString": "Staging / Scales"
}
]
},
{
"code": "2000000046",
"display": "Banff Classification of Allograft Pathology: Category 3",
"definition": "PROTECT-CHILD custom OMOP concept (Measurement domain, Staging / Scales): Banff Classification of Allograft Pathology: Category 3.",
"property": [
{
"code": "domain",
"valueString": "Measurement"
},
{
"code": "class",
"valueString": "Staging / Scales"
}
]
},
{
"code": "2000000047",
"display": "Banff Classification of Allograft Pathology: Category 4",
"definition": "PROTECT-CHILD custom OMOP concept (Measurement domain, Staging / Scales): Banff Classification of Allograft Pathology: Category 4.",
"property": [
{
"code": "domain",
"valueString": "Measurement"
},
{
"code": "class",
"valueString": "Staging / Scales"
}
]
},
{
"code": "2000000048",
"display": "Banff Classification of Allograft Pathology: Category 5",
"definition": "PROTECT-CHILD custom OMOP concept (Measurement domain, Staging / Scales): Banff Classification of Allograft Pathology: Category 5.",
"property": [
{
"code": "domain",
"valueString": "Measurement"
},
{
"code": "class",
"valueString": "Staging / Scales"
}
]
},
{
"code": "2000000032",
"display": "Delayed graft function",
"definition": "PROTECT-CHILD custom OMOP concept (Condition domain, Disorder): Delayed graft function.",
"property": [
{
"code": "domain",
"valueString": "Condition"
},
{
"code": "class",
"valueString": "Disorder"
}
]
},
{
"code": "2000000026",
"display": "Hypoxic ischemic event",
"definition": "PROTECT-CHILD custom OMOP concept (Condition domain, Disorder): Hypoxic ischemic event.",
"property": [
{
"code": "domain",
"valueString": "Condition"
},
{
"code": "class",
"valueString": "Disorder"
}
]
},
{
"code": "2000000035",
"display": "Histological evidence of CNI toxicity",
"definition": "PROTECT-CHILD custom OMOP concept (Condition domain, Clinical Finding): Histological evidence of CNI toxicity.",
"property": [
{
"code": "domain",
"valueString": "Condition"
},
{
"code": "class",
"valueString": "Clinical Finding"
}
]
},
{
"code": "2000000049",
"display": "Anti-gp210 antibody level",
"definition": "PROTECT-CHILD custom OMOP concept (Measurement domain, Procedure): Anti-gp210 antibody level.",
"property": [
{
"code": "domain",
"valueString": "Measurement"
},
{
"code": "class",
"valueString": "Procedure"
}
]
},
{
"code": "2000000050",
"display": "Anti-sp100 antibody level",
"definition": "PROTECT-CHILD custom OMOP concept (Measurement domain, Procedure): Anti-sp100 antibody level.",
"property": [
{
"code": "domain",
"valueString": "Measurement"
},
{
"code": "class",
"valueString": "Procedure"
}
]
},
{
"code": "2000000051",
"display": "MFI category: Weak Reaction (500-2k)",
"definition": "PROTECT-CHILD custom OMOP concept (Measurement domain, Staging / Scales): MFI category: Weak Reaction (500-2k).",
"property": [
{
"code": "domain",
"valueString": "Measurement"
},
{
"code": "class",
"valueString": "Staging / Scales"
}
]
},
{
"code": "2000000052",
"display": "MFI category: Moderate Reaction (2k-4k)",
"definition": "PROTECT-CHILD custom OMOP concept (Measurement domain, Staging / Scales): MFI category: Moderate Reaction (2k-4k).",
"property": [
{
"code": "domain",
"valueString": "Measurement"
},
{
"code": "class",
"valueString": "Staging / Scales"
}
]
},
{
"code": "2000000053",
"display": "MFI category: Strong Reaction (>4k)",
"definition": "PROTECT-CHILD custom OMOP concept (Measurement domain, Staging / Scales): MFI category: Strong Reaction (>4k).",
"property": [
{
"code": "domain",
"valueString": "Measurement"
},
{
"code": "class",
"valueString": "Staging / Scales"
}
]
},
{
"code": "2000000054",
"display": "has finding",
"definition": "PROTECT-CHILD custom OMOP concept (Relationship domain, Relationship): has finding.",
"property": [
{
"code": "domain",
"valueString": "Relationship"
},
{
"code": "class",
"valueString": "Relationship"
}
]
},
{
"code": "2000000055",
"display": "is finding of",
"definition": "PROTECT-CHILD custom OMOP concept (Relationship domain, Relationship): is finding of.",
"property": [
{
"code": "domain",
"valueString": "Relationship"
},
{
"code": "class",
"valueString": "Relationship"
}
]
}
]
}