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FHIR IG analytics

Packagehl7.eu.fhir.flute
Resource TypeQuestionnaireResponse
IdQuestionnaireResponse-Questionnaire-StudyVariable-S1-imaging.json
FHIR VersionR4

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Narrative

Note: links and images are rebased to the (stated) source

Generated Narrative: QuestionnaireResponse Questionnaire-StudyVariable-S1-imaging

LinkIDTextDefinitionAnswerdoco
.. Questionnaire-StudyVariable-S1-imagingQuestionnaire:Study variable Extraction
... g-proc
.... type-of-biopsyType of biopsySNOMED CT: 27582007 (Repeat)
.... procedure-statusStatusEventStatus: completed (Completed)
.... biopsy-dateDate when the biopsy was performed2024-02-10T12:12:00Z
.... biopsyBiopsySNOMED CT: 86273004 (Biopsy)
.... biopsy-bodySiteBiopsy bodySiteSNOMED CT: 41216001 (Prostate)
... g-fam-hist
.... family-history-pcaFamily history of prostate cancerSNOMED CT: 1259388006 (Primary prostate cancer)
.... family-statusFamily StatusFamilyHistoryStatus: completed (Completed)
.... family-relationshipFamily relationshipRoleCode: FAMMEMB (family member)
... g-obs-psaObservation PSA group
.... psaMeasure of prostate-specific antigen reported in ng/ml5 ng/mL (Details: UCUM codeng/mL = 'ng/mL')
.... psa-codePSA codeLOINC: 2857-1 (Prostate specific Ag [Mass/volume] in Serum or Plasma)
.... psa-statusPSA StatusObservationStatus: final (Final)
... g-proc-dreProcedure DRE group
.... dreResults of digital rectal examinationSNOMED CT: 131196009 (Susceptible)
.... dre-codeDRE codeSNOMED CT: 410006001 (DRE - Digital rectal examination)
.... dre-statusDRE StatusEventStatus: completed (Completed)
.... dre-bodySiteDRE bodySiteSNOMED CT: 41216001 (Prostate)
... g-obs-prost-volObservation Prostate Volume group
.... prostate-volumeProstate volume in cc30 cm3 (Details: UCUM codecm3 = 'cm3')
.... prostate-codeProstate volume codeSNOMED CT: 1297142007 (Volume of prostate)
.... prostate-statusProstate volume StatusObservationStatus: final (Final)
.... prostate-bodySiteProstate volume bodySiteSNOMED CT: 41216001 (Prostate)
... g-obs-piradsObservation PI-RADS group
.... piradsPI-RADS scorePIRADS Score: 3 (Intermediate)
.... pirads-codePI-RADS codeSNOMED CT: 719178004 (Multiparametric magnetic resonance imaging of prostate)
.... pirads-statusPI-RADS StatusObservationStatus: final (Final)
... g-imagImaging Study group
.... study-id-systemStudy ID Systemhttp://hospital.example.org/imaging/studies
.... study-id-valueStudy ID valueSTUDY-12345
.... imagingstudy-statusStudy StatusImagingStudyStatus: available (Available)
.... imagingstudy-startedStudy Started DateTime2023-08-15T10:30:00Z
.... imagingstudy-endpointStudy DICOM URL Endpointhttp://dicomserver.example.org
.... imagingstudy-series-uidStudy Series UID1.2.840.113619.2.55.3.604688437.783.1599767052.467
.... imagingstudy-series-modalityStudy Series ModalityDICOM: CT (Computed Tomography)
.... imagingstudy-instance-uidStudy instance UID1.2.840.113619.2.55.3.604688437.783.1599767052.468
.... imagingstudy-instance-classStudy instance SOP Classunknown: urn:oid:1.2.840.10008.5.1.4.1.1.2 (urn:oid:1.2.840.10008.5.1.4.1.1.2)
.... imagingstudy-noteAny metadata relevant to filter the dataset before ML trainingNo artifacts present

doco Documentation for this format

Source1

{
  "resourceType": "QuestionnaireResponse",
  "id": "Questionnaire-StudyVariable-S1-imaging",
  "text": {
    "status": "generated",
    "div": "<!-- snip (see above) -->"
  },
  "questionnaire": "http://hl7.eu/fhir/ig/flute/Questionnaire/Questionnaire-StudyVariable",
  "status": "in-progress",
  "subject": {
    "reference": "urn:uuid:b5d7888a-21fe-44bd-b988-a63f34555d2a"
  },
  "item": [
    {
      "linkId": "g-proc",
      "definition": "http://hl7.eu/fhir/ig/flute/StructureDefinition/PR-Biopsy#Procedure",
      "item": [
        {
          "linkId": "type-of-biopsy",
          "definition": "http://hl7.eu/fhir/ig/flute/StructureDefinition/PR-Biopsy#Procedure.category.coding",
          "text": "Type of biopsy",
          "answer": [
            {
              "valueCoding": {
                "system": "http://snomed.info/sct",
                "code": "27582007"
              }
            }
          ]
        },
        {
          "linkId": "procedure-status",
          "definition": "http://hl7.eu/fhir/ig/flute/StructureDefinition/PR-Biopsy#Procedure.status",
          "text": "Status",
          "answer": [
            {
              "valueCoding": {
                "system": "http://hl7.org/fhir/event-status",
                "code": "completed"
              }
            }
          ]
        },
        {
          "linkId": "biopsy-date",
          "definition": "http://hl7.eu/fhir/ig/flute/StructureDefinition/PR-Biopsy#Procedure.performedDateTime",
          "text": "Date when the biopsy was performed",
          "answer": [
            {
              "valueDateTime": "2024-02-10T12:12:00Z"
            }
          ]
        },
        {
          "linkId": "biopsy",
          "definition": "http://hl7.eu/fhir/ig/flute/StructureDefinition/PR-Biopsy#Procedure.code.coding",
          "text": "Biopsy",
          "answer": [
            {
              "valueCoding": {
                "system": "http://snomed.info/sct",
                "code": "86273004",
                "display": "Biopsy"
              }
            }
          ]
        },
        {
          "linkId": "biopsy-bodySite",
          "definition": "http://hl7.eu/fhir/ig/flute/StructureDefinition/PR-Biopsy#Procedure.bodySite.coding",
          "text": "Biopsy bodySite",
          "answer": [
            {
              "valueCoding": {
                "system": "http://snomed.info/sct",
                "code": "41216001",
                "display": "Prostate"
              }
            }
          ]
        }
      ]
    },
    {
      "linkId": "g-fam-hist",
      "definition": "http://hl7.eu/fhir/ig/flute/StructureDefinition/PR-ProstateCancerFamilyHistory#FamilyMemberHistory",
      "item": [
        {
          "linkId": "family-history-pca",
          "definition": "http://hl7.eu/fhir/ig/flute/StructureDefinition/PR-ProstateCancerFamilyHistory#FamilyMemberHistory.condition.code.coding",
          "text": "Family history of prostate cancer",
          "answer": [
            {
              "valueCoding": {
                "system": "http://snomed.info/sct",
                "code": "1259388006"
              }
            }
          ]
        },
        {
          "linkId": "family-status",
          "definition": "http://hl7.eu/fhir/ig/flute/StructureDefinition/PR-ProstateCancerFamilyHistory#FamilyMemberHistory.status",
          "text": "Family Status",
          "answer": [
            {
              "valueCoding": {
                "system": "http://hl7.org/fhir/history-status",
                "code": "completed"
              }
            }
          ]
        },
        {
          "linkId": "family-relationship",
          "definition": "http://hl7.eu/fhir/ig/flute/StructureDefinition/PR-ProstateCancerFamilyHistory#FamilyMemberHistory.relationship.coding",
          "text": "Family relationship",
          "answer": [
            {
              "valueCoding": {
                "system": "http://terminology.hl7.org/CodeSystem/v3-RoleCode",
                "code": "FAMMEMB"
              }
            }
          ]
        }
      ]
    },
    {
      "linkId": "g-obs-psa",
      "definition": "http://hl7.eu/fhir/ig/flute/StructureDefinition/PR-ProstateSpecificAntigen#Observation",
      "text": "Observation PSA group",
      "item": [
        {
          "linkId": "psa",
          "definition": "http://hl7.eu/fhir/ig/flute/StructureDefinition/PR-ProstateSpecificAntigen#Observation.value",
          "text": "Measure of prostate-specific antigen reported in ng/ml",
          "answer": [
            {
              "valueQuantity": {
                "value": 5,
                "system": "http://unitsofmeasure.org",
                "code": "ng/mL"
              }
            }
          ]
        },
        {
          "linkId": "psa-code",
          "definition": "http://hl7.eu/fhir/ig/flute/StructureDefinition/PR-ProstateSpecificAntigen#Observation.code.coding",
          "text": "PSA code",
          "answer": [
            {
              "valueCoding": {
                "system": "http://loinc.org",
                "code": "2857-1",
                "display": "Prostate specific Ag [Mass/volume] in Serum or Plasma"
              }
            }
          ]
        },
        {
          "linkId": "psa-status",
          "definition": "http://hl7.eu/fhir/ig/flute/StructureDefinition/PR-ProstateSpecificAntigen#Observation.status",
          "text": "PSA Status",
          "answer": [
            {
              "valueCoding": {
                "system": "http://hl7.org/fhir/observation-status",
                "code": "final"
              }
            }
          ]
        }
      ]
    },
    {
      "linkId": "g-proc-dre",
      "definition": "http://hl7.eu/fhir/ig/flute/StructureDefinition/PR-DigitalRectalExamination#Procedure",
      "text": "Procedure DRE group",
      "item": [
        {
          "linkId": "dre",
          "definition": "http://hl7.eu/fhir/ig/flute/StructureDefinition/PR-DigitalRectalExamination#Procedure.outcome.coding",
          "text": "Results of digital rectal examination",
          "answer": [
            {
              "valueCoding": {
                "system": "http://snomed.info/sct",
                "code": "131196009"
              }
            }
          ]
        },
        {
          "linkId": "dre-code",
          "definition": "http://hl7.eu/fhir/ig/flute/StructureDefinition/PR-DigitalRectalExamination#Procedure.code.coding",
          "text": "DRE code",
          "answer": [
            {
              "valueCoding": {
                "system": "http://snomed.info/sct",
                "code": "410006001",
                "display": "DRE - Digital rectal examination"
              }
            }
          ]
        },
        {
          "linkId": "dre-status",
          "definition": "http://hl7.eu/fhir/ig/flute/StructureDefinition/PR-DigitalRectalExamination#Procedure.status",
          "text": "DRE Status",
          "answer": [
            {
              "valueCoding": {
                "system": "http://hl7.org/fhir/event-status",
                "code": "completed"
              }
            }
          ]
        },
        {
          "linkId": "dre-bodySite",
          "definition": "http://hl7.eu/fhir/ig/flute/StructureDefinition/PR-DigitalRectalExamination#Procedure.bodySite.coding",
          "text": "DRE bodySite",
          "answer": [
            {
              "valueCoding": {
                "system": "http://snomed.info/sct",
                "code": "41216001",
                "display": "Prostate"
              }
            }
          ]
        }
      ]
    },
    {
      "linkId": "g-obs-prost-vol",
      "definition": "http://hl7.eu/fhir/ig/flute/StructureDefinition/PR-ProstateVolume#Observation",
      "text": "Observation Prostate Volume group",
      "item": [
        {
          "linkId": "prostate-volume",
          "definition": "http://hl7.eu/fhir/ig/flute/StructureDefinition/PR-ProstateVolume#Observation.value",
          "text": "Prostate volume in cc",
          "answer": [
            {
              "valueQuantity": {
                "value": 30,
                "system": "http://unitsofmeasure.org",
                "code": "cm3"
              }
            }
          ]
        },
        {
          "linkId": "prostate-code",
          "definition": "http://hl7.eu/fhir/ig/flute/StructureDefinition/PR-ProstateVolume#Observation.code.coding",
          "text": "Prostate volume code",
          "answer": [
            {
              "valueCoding": {
                "system": "http://snomed.info/sct",
                "code": "1297142007",
                "display": "Volume of prostate"
              }
            }
          ]
        },
        {
          "linkId": "prostate-status",
          "definition": "http://hl7.eu/fhir/ig/flute/StructureDefinition/PR-ProstateVolume#Observation.status",
          "text": "Prostate volume Status",
          "answer": [
            {
              "valueCoding": {
                "system": "http://hl7.org/fhir/observation-status",
                "code": "final"
              }
            }
          ]
        },
        {
          "linkId": "prostate-bodySite",
          "definition": "http://hl7.eu/fhir/ig/flute/StructureDefinition/PR-ProstateVolume#Observation.bodySite.coding",
          "text": "Prostate volume bodySite",
          "answer": [
            {
              "valueCoding": {
                "system": "http://snomed.info/sct",
                "code": "41216001",
                "display": "Prostate"
              }
            }
          ]
        }
      ]
    },
    {
      "linkId": "g-obs-pirads",
      "definition": "http://hl7.eu/fhir/ig/flute/StructureDefinition/PR-PIRADSScore#Observation",
      "text": "Observation PI-RADS group",
      "item": [
        {
          "linkId": "pirads",
          "definition": "http://hl7.eu/fhir/ig/flute/StructureDefinition/PR-PIRADSScore#Observation.valueCodeableConcept.coding",
          "text": "PI-RADS score",
          "answer": [
            {
              "valueCoding": {
                "system": "http://hl7.eu/fhir/ig/flute/CodeSystem/COS-PIRADSScore",
                "code": "3",
                "display": "Intermediate"
              }
            }
          ]
        },
        {
          "linkId": "pirads-code",
          "definition": "http://hl7.eu/fhir/ig/flute/StructureDefinition/PR-PIRADSScore#Observation.code.coding",
          "text": "PI-RADS code",
          "answer": [
            {
              "valueCoding": {
                "system": "http://snomed.info/sct",
                "code": "719178004",
                "display": "Multiparametric magnetic resonance imaging of prostate"
              }
            }
          ]
        },
        {
          "linkId": "pirads-status",
          "definition": "http://hl7.eu/fhir/ig/flute/StructureDefinition/PR-PIRADSScore#Observation.status",
          "text": "PI-RADS Status",
          "answer": [
            {
              "valueCoding": {
                "system": "http://hl7.org/fhir/observation-status",
                "code": "final"
              }
            }
          ]
        }
      ]
    },
    {
      "linkId": "g-imag",
      "definition": "http://hl7.eu/fhir/ig/flute/StructureDefinition/imagingStudy-eu-flute#ImagingStudy",
      "text": "Imaging Study group",
      "item": [
        {
          "linkId": "study-id-system",
          "definition": "http://hl7.eu/fhir/ig/flute/StructureDefinition/imagingStudy-eu-flute#ImagingStudy.identifier.system",
          "text": "Study ID System",
          "answer": [
            {
              "valueUri": "http://hospital.example.org/imaging/studies"
            }
          ]
        },
        {
          "linkId": "study-id-value",
          "definition": "http://hl7.eu/fhir/ig/flute/StructureDefinition/imagingStudy-eu-flute#ImagingStudy.identifier.value",
          "text": "Study ID value",
          "answer": [
            {
              "valueString": "STUDY-12345"
            }
          ]
        },
        {
          "linkId": "imagingstudy-status",
          "definition": "http://hl7.eu/fhir/ig/flute/StructureDefinition/imagingStudy-eu-flute#ImagingStudy.status",
          "text": "Study Status",
          "answer": [
            {
              "valueCoding": {
                "system": "http://hl7.org/fhir/imagingstudy-status",
                "code": "available"
              }
            }
          ]
        },
        {
          "linkId": "imagingstudy-started",
          "definition": "http://hl7.eu/fhir/ig/flute/StructureDefinition/imagingStudy-eu-flute#ImagingStudy.started",
          "text": "Study Started DateTime",
          "answer": [
            {
              "valueDateTime": "2023-08-15T10:30:00Z"
            }
          ]
        },
        {
          "linkId": "imagingstudy-endpoint",
          "definition": "http://hl7.eu/fhir/ig/flute/StructureDefinition/imagingStudy-eu-flute#ImagingStudy.endpoint.display",
          "text": "Study DICOM URL Endpoint",
          "answer": [
            {
              "valueString": "http://dicomserver.example.org"
            }
          ]
        },
        {
          "linkId": "imagingstudy-series-uid",
          "definition": "http://hl7.eu/fhir/ig/flute/StructureDefinition/imagingStudy-eu-flute#ImagingStudy.series[0].uid",
          "text": "Study Series UID",
          "answer": [
            {
              "valueString": "1.2.840.113619.2.55.3.604688437.783.1599767052.467"
            }
          ]
        },
        {
          "linkId": "imagingstudy-series-modality",
          "definition": "http://hl7.eu/fhir/ig/flute/StructureDefinition/imagingStudy-eu-flute#ImagingStudy.series[0].modality",
          "text": "Study Series Modality",
          "answer": [
            {
              "valueCoding": {
                "system": "http://dicom.nema.org/resources/ontology/DCM",
                "code": "CT"
              }
            }
          ]
        },
        {
          "linkId": "imagingstudy-instance-uid",
          "definition": "http://hl7.eu/fhir/ig/flute/StructureDefinition/imagingStudy-eu-flute#ImagingStudy.series[0].instance[0].uid",
          "text": "Study instance UID",
          "answer": [
            {
              "valueString": "1.2.840.113619.2.55.3.604688437.783.1599767052.468"
            }
          ]
        },
        {
          "linkId": "imagingstudy-instance-class",
          "definition": "http://hl7.eu/fhir/ig/flute/StructureDefinition/imagingStudy-eu-flute#ImagingStudy.series[0].instance[0].sopClass",
          "text": "Study instance SOP Class",
          "answer": [
            {
              "valueCoding": {
                "system": "urn:ietf:rfc:3986",
                "code": "urn:oid:1.2.840.10008.5.1.4.1.1.2"
              }
            }
          ]
        },
        {
          "linkId": "imagingstudy-note",
          "definition": "http://hl7.eu/fhir/ig/flute/StructureDefinition/imagingStudy-eu-flute#ImagingStudy.note.text",
          "text": "Any metadata relevant to filter the dataset before ML training",
          "answer": [
            {
              "valueString": "No artifacts present"
            }
          ]
        }
      ]
    }
  ]
}