FHIR IG analytics| Package | fhir.nwgenomics.nhs.uk |
| Resource Type | ConceptMap |
| Id | ConceptMap-SampleSCTtoIGENE.json |
| FHIR Version | R4 |
| Source | https://build.fhir.org/ig/nw-gmsa/nw-gmsa.github.com/ConceptMap-SampleSCTtoIGENE.html |
| URL | https://fhir.nwgenomics.nhs.uk/ConceptMap/SampleSCTtoIGENE |
| Version | 0.2.1 |
| Status | draft |
| Date | 2026-02-23T14:13:35+00:00 |
| Title | Sample Type (SNOMED) to iGene Specimen Type |
| Realm | us |
| Authority | hl7 |
| Description | Sample Type (SNOMED) to iGene Specimen Type |
No resources found
| CodeSystem | |
| sct | SNOMED codes used in this IG |
| IGENE | iGene Codes |
| ValueSet | |
| specimen-type | Specimen Type |
Note: links and images are rebased to the (stated) source
Generated Narrative: ConceptMap SampleSCTtoIGENE
Mapping from Specimen Type to (not specified)
Group 1 Mapping from http://snomed.info/sct|http://snomed.info/sct/83821000000107 to iGene Codes
| Source Concept Details | Relationship | Target Concept Details | ||
| Codes from http://snomed.info/sct|http://snomed.info/sct/83821000000107 | Codes from iGene Codes | |||
| 119297000 | Blood specimen | is equivalent to | SAMPLE: BL | |
| 122556008 | Cord blood specimen | is equivalent to | SAMPLE: BL | |
| 122575003 | Urine specimen | is equivalent to | SAMPLE: Urine | |
| 441479001 | Fresh tissue specimen | is equivalent to | SAMPLE: TC | |
| 16214131000119100 | is equivalent to | SAMPLE: TC | ||
| 119342007 | Saliva specimen | is equivalent to | SAMPLE: SALIVA | |
| 309147000 | Thyroid cyst fluid sample | is equivalent to | SAMPLE: Cystic fluid | |
| 258450006 | Cerebrospinal fluid sample | is equivalent to | SAMPLE: CSF | |
| 119373006 | Amniotic fluid specimen | is equivalent to | SAMPLE: AF | |
| 309201001 | Ascitic fluid sample | is equivalent to | SAMPLE: Ascitic fluid | |
| 258580003 | Whole blood sample | is equivalent to | SAMPLE: BL | |
| 737357006 | Foetal blood specimen | is equivalent to | SAMPLE: BL | |
| 122555007 | Venous blood specimen | is equivalent to | SAMPLE: BL | |
| 440500007 | Blood spot specimen (specimen) | is equivalent to | SAMPLE: BSP | |
| 119359002 | Bone marrow specimen | is equivalent to | SAMPLE: BM | |
| 733104004 | Buccal swab | is equivalent to | SAMPLE: BS | |
| 258565009 | Chorionic villi sample | is equivalent to | SAMPLE: CVB | |
| 702451000 | Cultured cells (substance) | is equivalent to | SAMPLE: Cult Cells | |
| 441652008 | Formalin-fixed paraffin-embedded tissue specimen | is related to | SAMPLE: FFPE-SL | |
| is related to | SAMPLE: FFPE-SH | |||
| is related to | SAMPLE: FFPE-PCS | |||
| 3040001000004100 | is equivalent to | SAMPLE: FFPE-WB | ||
| 122571007 | Pericardial fluid specimen | is equivalent to | SAMPLE: PERICARDIAL FLUID | |
| 418564007 | Pleural fluid specimen (specimen) | is equivalent to | SAMPLE: PLF | |
FHIR
FHIRsmith{
"resourceType": "ConceptMap",
"id": "SampleSCTtoIGENE",
"text": {
"status": "generated",
"div": "<!-- snip (see above) -->"
},
"url": "https://fhir.nwgenomics.nhs.uk/ConceptMap/SampleSCTtoIGENE",
"version": "0.2.1",
"title": "Sample Type (SNOMED) to iGene Specimen Type",
"status": "draft",
"date": "2026-02-23T14:13:35+00:00",
"publisher": "NHS North West Genomics",
"contact": [
{
"telecom": [
{
"system": "url",
"value": "https://www.nwgenomics.nhs.uk/contact-us"
}
]
}
],
"description": "Sample Type (SNOMED) to iGene Specimen Type",
"jurisdiction": [
{
"coding": [
{
"system": "urn:iso:std:iso:3166",
"code": "GB",
"display": "United Kingdom of Great Britain and Northern Ireland"
}
]
}
],
"sourceCanonical": "https://fhir.nwgenomics.nhs.uk/ValueSet/specimen-type",
"group": [
{
"source": "http://snomed.info/sct",
"sourceVersion": "http://snomed.info/sct/83821000000107",
"target": "https://fhir.nwgenomics.nhs.uk/CodeSystem/IGENE",
"element": [
{
"code": "119297000",
"target": [
{
"code": "SAMPLE: BL",
"equivalence": "equivalent"
}
]
},
{
"code": "122556008",
"target": [
{
"code": "SAMPLE: BL",
"equivalence": "equivalent"
}
]
},
{
"code": "122575003",
"target": [
{
"code": "SAMPLE: Urine",
"equivalence": "equivalent"
}
]
},
{
"code": "441479001",
"target": [
{
"code": "SAMPLE: TC",
"equivalence": "equivalent"
}
]
},
{
"code": "16214131000119100",
"target": [
{
"code": "SAMPLE: TC",
"equivalence": "equivalent"
}
]
},
{
"code": "119342007",
"target": [
{
"code": "SAMPLE: SALIVA",
"equivalence": "equivalent"
}
]
},
{
"code": "309147000",
"target": [
{
"code": "SAMPLE: Cystic fluid",
"equivalence": "equivalent"
}
]
},
{
"code": "258450006",
"target": [
{
"code": "SAMPLE: CSF",
"equivalence": "equivalent"
}
]
},
{
"code": "119373006",
"target": [
{
"code": "SAMPLE: AF",
"equivalence": "equivalent"
}
]
},
{
"code": "309201001",
"target": [
{
"code": "SAMPLE: Ascitic fluid",
"equivalence": "equivalent"
}
]
},
{
"code": "258580003",
"target": [
{
"code": "SAMPLE: BL",
"equivalence": "equivalent"
}
]
},
{
"code": "737357006",
"target": [
{
"code": "SAMPLE: BL",
"equivalence": "equivalent"
}
]
},
{
"code": "122555007",
"target": [
{
"code": "SAMPLE: BL",
"equivalence": "equivalent"
}
]
},
{
"code": "440500007",
"target": [
{
"code": "SAMPLE: BSP",
"equivalence": "equivalent"
}
]
},
{
"code": "119359002",
"target": [
{
"code": "SAMPLE: BM",
"equivalence": "equivalent"
}
]
},
{
"code": "733104004",
"target": [
{
"code": "SAMPLE: BS",
"equivalence": "equivalent"
}
]
},
{
"code": "258565009",
"target": [
{
"code": "SAMPLE: CVB",
"equivalence": "equivalent"
}
]
},
{
"code": "702451000",
"target": [
{
"code": "SAMPLE: Cult Cells",
"equivalence": "equivalent"
}
]
},
{
"code": "441652008",
"target": [
{
"code": "SAMPLE: FFPE-SL",
"equivalence": "relatedto"
},
{
"code": "SAMPLE: FFPE-SH",
"equivalence": "relatedto"
},
{
"code": "SAMPLE: FFPE-PCS",
"equivalence": "relatedto"
}
]
},
{
"code": "3040001000004100",
"target": [
{
"code": "SAMPLE: FFPE-WB",
"equivalence": "equivalent"
}
]
},
{
"code": "122571007",
"target": [
{
"code": "SAMPLE: PERICARDIAL FLUID",
"equivalence": "equivalent"
}
]
},
{
"code": "418564007",
"target": [
{
"code": "SAMPLE: PLF",
"equivalence": "equivalent"
}
]
}
]
}
]
}