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Packagefhir.nwgenomics.nhs.uk
Resource TypeCodeSystem
IdCodeSystem-ISUBTYPE.json
FHIR VersionR4
Sourcehttps://build.fhir.org/ig/nw-gmsa/nw-gmsa.github.com/CodeSystem-ISUBTYPE.html
URLhttps://fhir.nwgenomics.nhs.uk/CodeSystem/ISUBTYPE
Version0.2.1
Statusactive
Date2026-03-04
NameISUBTYPE
TitleiGene Sample Sub Type
Realmus
Authorityhl7
DescriptioniGene Sample Sub Type
Contentfragment

Resources that use this resource

ConceptMap
fhir.nwgenomics.nhs.uk#currentSampleBodySiteSCTtoISUBTYPESample Body Site (SNOMED) to iGene Specimen Sub Type
ValueSet
fhir.nwgenomics.nhs.uk#currentspecimen-bodysiteSpecimen Body Site

Resources that this resource uses

No resources found


Narrative

Note: links and images are rebased to the (stated) source

Generated Narrative: CodeSystem ISUBTYPE

This case-sensitive code system https://fhir.nwgenomics.nhs.uk/CodeSystem/ISUBTYPE provides a fragment that includes following codes:

CodeDisplay
AMNION/CORD ~Amnion / Cord
CL ~Cell Line
CSF ~Cerebral Spinal Fluid
LN ~Lymph Node
MALIG EFF ~Malignant Effusion
PAB ~Paraffin Block
Stored Fibroblast ~Stored Fibroblast Sample
AF Amniotic Fluid
ASF Ascitic Fluid
BL Blood
BS Buccal Swab
CP Cell Pellet
CV Chorionic Villus Biopsy
CORD/AMNION Cord / Amnion
CB Cord Blood
CORD INS Cord Insertion Site
CC Cultured Cells
CT Cultured Tissue
Fetal Blood Fetal Blood
FETAL Fetal Tissue
FCS Fixed Cell Suspension
GERMLINE Germline
WGS_LIQ_TUM_SAMP Liquid tumour sample
LIVER Liver
LUNG Lung
MUSCLE Muscle
NORM Normal
WGS_NOR_GERM_SAMP Normal or Germline sample
NORMT Normal Tissue
MEMB Placental Membrane
PLAC Placental Villus
POC Products Of Conception
SALIVA Saliva
SKIN Skin Biopsy
WGS_SOL_TUM_SAMP Solid tumour sample
SPLEEN Spleen
TISS Tissue
TUM Tumour
CORD Umbilical Cord
URINE Urine

Source1

{
  "resourceType": "CodeSystem",
  "id": "ISUBTYPE",
  "text": {
    "status": "generated",
    "div": "<!-- snip (see above) -->"
  },
  "url": "https://fhir.nwgenomics.nhs.uk/CodeSystem/ISUBTYPE",
  "version": "0.2.1",
  "name": "ISUBTYPE",
  "title": "iGene Sample Sub Type",
  "status": "active",
  "experimental": false,
  "date": "2026-03-04",
  "publisher": "NHS North West Genomics",
  "contact": [
    {
      "telecom": [
        {
          "system": "url",
          "value": "https://www.nwgenomics.nhs.uk/contact-us"
        }
      ]
    }
  ],
  "description": "iGene Sample Sub Type",
  "jurisdiction": [
    {
      "coding": [
        {
          "system": "urn:iso:std:iso:3166",
          "code": "GB",
          "display": "United Kingdom of Great Britain and Northern Ireland"
        }
      ]
    }
  ],
  "caseSensitive": true,
  "content": "fragment",
  "concept": [
    {
      "code": "AMNION/CORD",
      "display": "~Amnion / Cord"
    },
    {
      "code": "CL",
      "display": "~Cell Line"
    },
    {
      "code": "CSF",
      "display": "~Cerebral Spinal Fluid"
    },
    {
      "code": "LN",
      "display": "~Lymph Node"
    },
    {
      "code": "MALIG EFF",
      "display": "~Malignant Effusion"
    },
    {
      "code": "PAB",
      "display": "~Paraffin Block"
    },
    {
      "code": "Stored Fibroblast",
      "display": "~Stored Fibroblast Sample"
    },
    {
      "code": "AF",
      "display": "Amniotic Fluid"
    },
    {
      "code": "ASF",
      "display": "Ascitic Fluid"
    },
    {
      "code": "BL",
      "display": "Blood"
    },
    {
      "code": "BS",
      "display": "Buccal Swab"
    },
    {
      "code": "CP",
      "display": "Cell Pellet"
    },
    {
      "code": "CV",
      "display": "Chorionic Villus Biopsy"
    },
    {
      "code": "CORD/AMNION",
      "display": "Cord / Amnion"
    },
    {
      "code": "CB",
      "display": "Cord Blood"
    },
    {
      "code": "CORD INS",
      "display": "Cord Insertion Site"
    },
    {
      "code": "CC",
      "display": "Cultured Cells"
    },
    {
      "code": "CT",
      "display": "Cultured Tissue"
    },
    {
      "code": "Fetal Blood",
      "display": "Fetal Blood"
    },
    {
      "code": "FETAL",
      "display": "Fetal Tissue"
    },
    {
      "code": "FCS",
      "display": "Fixed Cell Suspension"
    },
    {
      "code": "GERMLINE",
      "display": "Germline"
    },
    {
      "code": "WGS_LIQ_TUM_SAMP",
      "display": "Liquid tumour sample"
    },
    {
      "code": "LIVER",
      "display": "Liver"
    },
    {
      "code": "LUNG",
      "display": "Lung"
    },
    {
      "code": "MUSCLE",
      "display": "Muscle"
    },
    {
      "code": "NORM",
      "display": "Normal"
    },
    {
      "code": "WGS_NOR_GERM_SAMP",
      "display": "Normal or Germline sample"
    },
    {
      "code": "NORMT",
      "display": "Normal Tissue"
    },
    {
      "code": "MEMB",
      "display": "Placental Membrane"
    },
    {
      "code": "PLAC",
      "display": "Placental Villus"
    },
    {
      "code": "POC",
      "display": "Products Of Conception"
    },
    {
      "code": "SALIVA",
      "display": "Saliva"
    },
    {
      "code": "SKIN",
      "display": "Skin Biopsy"
    },
    {
      "code": "WGS_SOL_TUM_SAMP",
      "display": "Solid tumour sample"
    },
    {
      "code": "SPLEEN",
      "display": "Spleen"
    },
    {
      "code": "TISS",
      "display": "Tissue"
    },
    {
      "code": "TUM",
      "display": "Tumour"
    },
    {
      "code": "CORD",
      "display": "Umbilical Cord"
    },
    {
      "code": "URINE",
      "display": "Urine"
    }
  ]
}