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Packagefhir.nwgenomics.nhs.uk
Resource TypeCodeSystem
IdCodeSystem-GenomicTestOutcomeCode.json
FHIR VersionR4
Sourcehttps://build.fhir.org/ig/nw-gmsa/nw-gmsa.github.com/CodeSystem-GenomicTestOutcomeCode.html
URLhttps://fhir.nwgenomics.nhs.uk/CodeSystem/GenomicTestOutcomeCode
Version0.1.0
Statusdraft
Date2025-05-08
NameGenomicTestOutcomeCode
TitleNHS England Genomic Test Outcome Code
Realmus
Authorityhl7
DescriptionTest Outcome Code from [NHS England Genomics Test Reporting Specification](https://www.england.nhs.uk/publication/genomics-testing-reporting-specification/)
Contentcomplete

Resources that use this resource

ValueSet
GenomicTestOutcomeCodesGenomic Test Outcome Codes

Resources that this resource uses

No resources found


Narrative

Note: links and images are rebased to the (stated) source

Generated Narrative: CodeSystem GenomicTestOutcomeCode

This case-sensitive code system https://fhir.nwgenomics.nhs.uk/CodeSystem/GenomicTestOutcomeCode defines the following codes:

CodeDisplay
311 RESULT CONSISTENT WITH REFERRAL INDICATION
312 RESULT PARTIALLY CAUSATIVE OF REFERRAL INDICATION
313 GENETIC CAUSE WAS NOT FOUND
314 RESULT OF UNCERTAIN SIGNIFICANCE
321 VARIANT DETECTED
322 VARIANT NOT DETECTED
323 FAMILY MEMBER TESTED TO AID INTERPRETATION OF PROBAND’S TEST; NOT INDEPENDENTLY ANALYSED
331 VARIANT(S) DETECTED
332 VARIANT(S) NOT DETECTED
411 ONCOGENIC/LIKELY ONCOGENIC VARIANT DETECTED CONTRIBUTING TO THE SUSPECTED DIAGNOSIS
412 ONCOGENIC/LIKELY ONCOGENIC VARIANT DETECTED WHICH CONTRIBUTES TO AN ALTERNATIVE DIAGNOSIS
413 NO ONCOGENIC/LIKELY ONCOGENIC VARIANT DETECTED WHICH REDUCES LIKELIHOOD BUT DOES NOT EXCLUDE (DIFFERENTIAL) DIAGNOSIS/DIAGNOSES
421 VARIANT DETECTED – WHERE A TARGETED TREATMENT IS AVAILABLE OR WHERE PROGNOSTIC/ACTIONABLE INFORMATION IS PROVIDED
422 WILDTYPE RESULT OBTAINED – WHERE THE ABSENCE OF A VARIANT MEANS TARGETED TREATMENT IS NOT AVAILABLE
423 WILDTYPE RESULT OBTAINED – WHERE THE ABSENCE OF A VARIANT MEANS TARGETED TREATMENT IS AVAILABLE OR WHERE PROGNOSTIC/ACTIONABLE INFORMATION IS PROVIDED
431 TARGET DETECTED AT A LEVEL REQUIRING CLINICAL ACTION
432 NO TARGET DETECTED OR TARGET DETECTED BELOW A LEVEL REQUIRING CLINICAL ACTION
961 ACTIONABLE PHARMACOGENOMIC VARIANT DETECTED
962 NO ACTIONABLE PHARMACOGENOMIC VARIANT DETECTED
971 FAILURE
981 ONCOGENIC/LIKELY ONCOGENIC VARIANT DETECTED IN GENE NOT ASSOCIATED WITH TUMOUR TYPE/INCIDENTAL FINDING
991 OTHER (NOT LISTED)
992 CAVEATED RESULT

Source1

{
  "resourceType": "CodeSystem",
  "id": "GenomicTestOutcomeCode",
  "text": {
    "status": "generated",
    "div": "<!-- snip (see above) -->"
  },
  "url": "https://fhir.nwgenomics.nhs.uk/CodeSystem/GenomicTestOutcomeCode",
  "version": "0.1.0",
  "name": "GenomicTestOutcomeCode",
  "title": "NHS England Genomic Test Outcome Code",
  "status": "draft",
  "experimental": false,
  "date": "2025-05-08",
  "publisher": "NHS North West Genomics",
  "contact": [
    {
      "telecom": [
        {
          "system": "url",
          "value": "https://www.nwgenomics.nhs.uk/contact-us"
        }
      ]
    }
  ],
  "description": "Test Outcome Code from [NHS England Genomics Test Reporting Specification](https://www.england.nhs.uk/publication/genomics-testing-reporting-specification/)",
  "jurisdiction": [
    {
      "coding": [
        {
          "system": "urn:iso:std:iso:3166",
          "code": "GB",
          "display": "United Kingdom of Great Britain and Northern Ireland"
        }
      ]
    }
  ],
  "caseSensitive": true,
  "content": "complete",
  "count": 23,
  "concept": [
    {
      "code": "311",
      "display": "RESULT CONSISTENT WITH REFERRAL INDICATION"
    },
    {
      "code": "312",
      "display": "RESULT  PARTIALLY CAUSATIVE OF REFERRAL INDICATION"
    },
    {
      "code": "313",
      "display": "GENETIC CAUSE WAS NOT FOUND"
    },
    {
      "code": "314",
      "display": "RESULT OF UNCERTAIN SIGNIFICANCE"
    },
    {
      "code": "321",
      "display": "VARIANT DETECTED"
    },
    {
      "code": "322",
      "display": "VARIANT NOT DETECTED"
    },
    {
      "code": "323",
      "display": "FAMILY MEMBER TESTED TO AID INTERPRETATION OF PROBAND’S TEST; NOT INDEPENDENTLY ANALYSED"
    },
    {
      "code": "331",
      "display": "VARIANT(S) DETECTED"
    },
    {
      "code": "332",
      "display": "VARIANT(S) NOT DETECTED"
    },
    {
      "code": "411",
      "display": "ONCOGENIC/LIKELY ONCOGENIC VARIANT DETECTED CONTRIBUTING TO THE SUSPECTED DIAGNOSIS"
    },
    {
      "code": "412",
      "display": "ONCOGENIC/LIKELY ONCOGENIC VARIANT DETECTED WHICH CONTRIBUTES TO AN ALTERNATIVE DIAGNOSIS"
    },
    {
      "code": "413",
      "display": "NO ONCOGENIC/LIKELY ONCOGENIC VARIANT DETECTED WHICH REDUCES LIKELIHOOD BUT DOES NOT EXCLUDE (DIFFERENTIAL) DIAGNOSIS/DIAGNOSES"
    },
    {
      "code": "421",
      "display": "VARIANT DETECTED – WHERE A TARGETED TREATMENT IS AVAILABLE OR WHERE PROGNOSTIC/ACTIONABLE INFORMATION IS PROVIDED"
    },
    {
      "code": "422",
      "display": "WILDTYPE RESULT OBTAINED – WHERE THE ABSENCE OF A VARIANT MEANS TARGETED TREATMENT IS NOT AVAILABLE"
    },
    {
      "code": "423",
      "display": "WILDTYPE RESULT OBTAINED – WHERE THE ABSENCE OF A VARIANT MEANS TARGETED TREATMENT IS AVAILABLE OR WHERE PROGNOSTIC/ACTIONABLE INFORMATION IS PROVIDED"
    },
    {
      "code": "431",
      "display": "TARGET DETECTED AT A LEVEL REQUIRING CLINICAL ACTION"
    },
    {
      "code": "432",
      "display": "NO TARGET DETECTED OR TARGET DETECTED BELOW A LEVEL REQUIRING CLINICAL ACTION"
    },
    {
      "code": "961",
      "display": "ACTIONABLE PHARMACOGENOMIC VARIANT DETECTED"
    },
    {
      "code": "962",
      "display": "NO ACTIONABLE PHARMACOGENOMIC VARIANT DETECTED"
    },
    {
      "code": "971",
      "display": "FAILURE"
    },
    {
      "code": "981",
      "display": "ONCOGENIC/LIKELY ONCOGENIC VARIANT DETECTED IN GENE NOT ASSOCIATED WITH TUMOUR TYPE/INCIDENTAL FINDING"
    },
    {
      "code": "991",
      "display": "OTHER (NOT LISTED)"
    },
    {
      "code": "992",
      "display": "CAVEATED RESULT"
    }
  ]
}