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FHIR IG analytics

Packagefhir.gdx
Resource TypeDiagnosticReport
IdDiagnosticReport-PrenatalGenomicReportPatientFemale.json
FHIR VersionR4

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Narrative

Note: links and images are rebased to the (stated) source

Generated Narrative: DiagnosticReport PrenatalGenomicReportPatientFemale

Genetic analysis report (Genetics)

SubjectJenny M (official) Female, DoB: 1988-02-12 ( Patient ID: 7fb905f171204b94b8ee33d33cb624e6 (use: official, ))
When For2024-06-26
Performers Organization Generic Laboratories, Inc. Practitioner PractitionerJane Smith

Report Details

CodeValueFlagsNote
Genetic variant assessmentAbsentFinal
Genetic variant assessmentAbsentFinal
Genetic variant assessmentPresentFinal
Genetic variant assessmentPresentFinal
Genetic variant assessmentAbsentFinal
Genetic variant assessmentPresentFinal
Genetic variant assessmentPresentFinal
Diagnostic ImplicationFinal
Diagnostic ImplicationFinal
Diagnostic ImplicationFinal

Risk not calculated for HFE-associated hereditary hemochromatosis

Diagnostic ImplicationFinal
Diagnostic ImplicationFinal

Risk not calculated for fragile X syndrome

Subject's offspring are at increased risk for inheriting the following genetic diseases: HFE-associated hereditary hemochromatosis, and fragile X syndrome

Coded Conclusions:

  • Positive

Source1

{
  "resourceType": "DiagnosticReport",
  "id": "PrenatalGenomicReportPatientFemale",
  "meta": {
    "profile": [
      "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-report"
    ]
  },
  "text": {
    "status": "generated",
    "div": "<!-- snip (see above) -->"
  },
  "extension": [
    {
      "url": "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-reference",
      "valueReference": {
        "reference": "Procedure/PrenatalGenomicStudyPatientFemale",
        "display": "Genomic study"
      }
    },
    {
      "url": "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-risk-assessment",
      "valueReference": {
        "reference": "RiskAssessment/PrenatalResidualRiskFactorXiDeficiencyPatientFemale",
        "display": "Genomic study"
      }
    },
    {
      "url": "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-risk-assessment",
      "valueReference": {
        "reference": "RiskAssessment/PrenatalResidualRiskGlycogenStorageDiseasePatientFemale",
        "display": "Genomic study"
      }
    },
    {
      "url": "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-risk-assessment",
      "valueReference": {
        "reference": "RiskAssessment/PrenatalResidualRiskPrimaryHyperoxaluriaPatientFemale",
        "display": "Genomic study"
      }
    }
  ],
  "basedOn": [
    {
      "reference": "ServiceRequest/PrenatalServiceRequestCouple"
    }
  ],
  "status": "final",
  "category": [
    {
      "coding": [
        {
          "system": "http://terminology.hl7.org/CodeSystem/v2-0074",
          "code": "GE",
          "display": "Genetics"
        }
      ]
    }
  ],
  "code": {
    "coding": [
      {
        "system": "http://loinc.org",
        "code": "51969-4",
        "display": "Genetic analysis report"
      }
    ]
  },
  "subject": {
    "reference": "Patient/PatientFemale"
  },
  "effectiveDateTime": "2024-06-26",
  "performer": [
    {
      "reference": "Organization/Organization"
    },
    {
      "reference": "Practitioner/PractitionerLabDirector"
    }
  ],
  "specimen": [
    {
      "reference": "Specimen/PrenatalSpecimenPatientFemale"
    }
  ],
  "result": [
    {
      "reference": "Observation/PrenatalVariantFactorXiDeficiencyPatientFemale"
    },
    {
      "reference": "Observation/PrenatalVariantGlycogenStorageDiseaseTypePatientFemale"
    },
    {
      "reference": "Observation/PrenatalVariant1SNPHereditaryHemochromatoPatientFemale"
    },
    {
      "reference": "Observation/PrenatalVariant2SNPHereditaryHemochromatoPatientFemale"
    },
    {
      "reference": "Observation/PrenatalVariantPrimaryHyperoxaluriaPatientFemale"
    },
    {
      "reference": "Observation/PrenatalVariant1FragileXSyndromePatientFemale"
    },
    {
      "reference": "Observation/PrenatalVariant2FragileXSyndromePatientFemale"
    },
    {
      "reference": "Observation/PrenatalDiagImpFactorXiDeficiencyPatientFemale",
      "display": "Normal genetic findings (finding)"
    },
    {
      "reference": "Observation/PrenatalDiagImpGlycogenStorageDiseasePatientFemale",
      "display": "Normal genetic findings (finding)"
    },
    {
      "reference": "Observation/PrenatalDiagImpHereditaryHemochromatoPatientFemale",
      "display": "Genetic disease (disorder)"
    },
    {
      "reference": "Observation/PrenatalDiagImpPrimaryHyperoxaluriaPatientFemale",
      "display": "Normal genetic findings (finding)"
    },
    {
      "reference": "Observation/PrenatalDiagImpFragileXSyndromePatientFemale",
      "display": "Genetic disorder carrier (finding)"
    }
  ],
  "conclusion": "Subject's offspring are at increased risk for inheriting the following genetic diseases: HFE-associated hereditary hemochromatosis, and fragile X syndrome",
  "conclusionCode": [
    {
      "coding": [
        {
          "system": "http://loinc.org",
          "code": "LA6576-8",
          "display": "Positive"
        }
      ]
    }
  ]
}