FHIR IG analytics| Package | fhir.deep6.ai |
| Resource Type | Observation |
| Id | Observation-example-variant-hgvs.json |
| FHIR Version | R4 |
No resources found
No resources found
Note: links and images are rebased to the (stated) source
Generated Narrative: Observation example-variant-hgvs
Profile: Deep 6 AI Variant
status: Final
category: Laboratory, Genetics
code: Genetic variant assessment
effective: 2023-05-09 20:26:11+0000
method: Sequencing
component
code: DNA change type
value: SNV
component
code: Gene studied [ID]
value: TP53
component
code: Amino acid change (pHGVS)
value: NM_000546.5:p.P278S
component
code: DNA change (c.HGVS)
value: NM_000546.5:c.832C>T
{
"resourceType": "Observation",
"id": "example-variant-hgvs",
"meta": {
"profile": [
"http://deep6.ai/fhir/StructureDefinition/deep-6-ai-variant-2.1.0"
]
},
"text": {
"status": "generated",
"div": "<!-- snip (see above) -->"
},
"status": "final",
"category": [
{
"coding": [
{
"system": "http://terminology.hl7.org/CodeSystem/observation-category",
"code": "laboratory"
}
]
},
{
"coding": [
{
"system": "http://terminology.hl7.org/CodeSystem/v2-0074",
"code": "GE",
"display": "Genetics"
}
]
}
],
"code": {
"coding": [
{
"system": "http://loinc.org",
"code": "69548-6",
"display": "Genetic variant assessment"
}
]
},
"subject": {
"reference": "Patient/patient-example"
},
"effectiveDateTime": "2023-05-09T20:26:11Z",
"method": {
"coding": [
{
"system": "http://loinc.org",
"code": "LA26398-0",
"display": "Sequencing"
}
]
},
"component": [
{
"code": {
"coding": [
{
"system": "http://loinc.org",
"code": "48019-4",
"display": "DNA change type"
}
]
},
"valueCodeableConcept": {
"coding": [
{
"system": "http://www.sequenceontology.org",
"code": "SO:0001483",
"display": "SNV"
}
]
}
},
{
"code": {
"coding": [
{
"system": "http://loinc.org",
"code": "48018-6",
"display": "Gene studied [ID]"
}
]
},
"valueCodeableConcept": {
"coding": [
{
"system": "http://www.genenames.org",
"code": "HGNC:11998"
}
],
"text": "TP53"
}
},
{
"code": {
"coding": [
{
"system": "http://loinc.org",
"code": "48005-3",
"display": "Amino acid change (pHGVS)"
}
]
},
"valueCodeableConcept": {
"coding": [
{
"system": "http://varnomen.hgvs.org",
"code": "NM_000546.5:p.P278S"
}
]
}
},
{
"code": {
"coding": [
{
"system": "http://loinc.org",
"code": "48004-6",
"display": "DNA change (c.HGVS)"
}
]
},
"valueCodeableConcept": {
"coding": [
{
"system": "http://varnomen.hgvs.org",
"code": "NM_000546.5:c.832C>T"
}
]
}
}
]
}