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FHIR IG analytics

Packagefhir.deep6.ai
Resource TypeDiagnosticReport
IdDiagnosticReport-genomics-report-example.json
FHIR VersionR4

Resources that use this resource

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Resources that this resource uses

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Narrative

Note: links and images are rebased to the (stated) source

Generated Narrative: DiagnosticReport genomics-report-example

Genetic analysis report (Genetics)

Subjectabc Hilll811 (maiden) Female, DoB: 1988-05-10 ( https://github.com/synthetichealth/synthea#patient-example)
When For2023-05-09 20:26:11+0000

Report Details

CodeValueFlagsNote
Genetic variant assessmentFinal
Genetic variant assessmentFinal
Genetic variant assessmentFinal

RET(NM_020630) rearrangement exon 9

Microsatellite instability [Interpretation] in Cancer specimen QualitativeMSI-HFinal
Mutations/Megabase [# Ratio] in Tumor29.8Final

Conclusion: lorem ipsum

Source1

{
  "resourceType": "DiagnosticReport",
  "id": "genomics-report-example",
  "meta": {
    "profile": [
      "http://deep6.ai/fhir/StructureDefinition/deep-6-ai-genomics-report-2.1.0"
    ]
  },
  "text": {
    "status": "generated",
    "div": "<!-- snip (see above) -->"
  },
  "status": "final",
  "category": [
    {
      "coding": [
        {
          "system": "http://terminology.hl7.org/CodeSystem/v2-0074",
          "code": "GE",
          "display": "Genetics"
        }
      ]
    }
  ],
  "code": {
    "coding": [
      {
        "system": "http://loinc.org",
        "code": "51969-4",
        "display": "Genetic analysis report"
      }
    ]
  },
  "subject": {
    "reference": "Patient/patient-example"
  },
  "effectiveDateTime": "2023-05-09T20:26:11Z",
  "result": [
    {
      "reference": "Observation/variant-simple-example"
    },
    {
      "reference": "Observation/variant-hgvs-example"
    },
    {
      "reference": "Observation/variant-rearrangement-example"
    },
    {
      "reference": "Observation/molecularbiomarker-msi-example"
    },
    {
      "reference": "Observation/molecularbiomarker-tmb-example"
    }
  ],
  "conclusion": "Conclusion: lorem ipsum",
  "presentedForm": [
    {
      "contentType": "text/plain",
      "data": "SGVsbG8gd29ybGQK",
      "title": "Comment"
    }
  ]
}