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Packageeu.miabis.r4
Resource TypeCodeSystem
IdCodeSystem-miabis-collection-sample-type-cs.json
FHIR VersionR4
Sourcehttps://simplifier.net/resolve?scope=eu.miabis.r4@1.3.0&canonical=https://fhir.bbmri-eric.eu/CodeSystem/miabis-collection-sample-type-cs
URLhttps://fhir.bbmri-eric.eu/CodeSystem/miabis-collection-sample-type-cs
Version1.3.0
Statusactive
Date2026-06-22T09:58:20+00:00
NameCollectionSampleTypeCS
TitleMIABIS Collection Sample Type Code System
DescriptionCodes for the collection sample types of the provided samples
Contentcomplete

Resources that use this resource

ValueSet
eu.miabis.r4#1.3.0miabis-collection-sample-typ-vsCollection Sample Type Value Set

Resources that this resource uses

No resources found


Narrative

Note: links and images are rebased to the (stated) source

Generated Narrative: CodeSystem miabis-collection-sample-type-cs

This code system https://fhir.bbmri-eric.eu/CodeSystem/miabis-collection-sample-type-cs defines the following codes:

CodeDisplay
Blood Blood
BuffyCoat Buffy Coat
CancerCellLine Cancer Cell Lines
DNA DNA
EntireOrgan Entire Organ
Faeces Faeces
EmbryoFetal Embryo or Fetal tissue
ImmortalizedCellLine Immortalized Cell Lines
IsolatedMicrobe Isolated Microbes
OtherBodyFluid Other Body Fluid
Plasma Plasma
PrimaryCells Primary Cells
PostMortemTissue Post-Mortem Tissue
RNA RNA
Saliva Saliva
Serum Serum
SpecimenEnvironment Specimen from Environment or from food
Swab Swab
TissueFrozen Tissue (frozen)
TissueFFPE Tissue (FFPE)
Urine Urine
Other Other

Source1

{
  "resourceType": "CodeSystem",
  "id": "miabis-collection-sample-type-cs",
  "text": {
    "status": "generated",
    "div": "<!-- snip (see above) -->"
  },
  "url": "https://fhir.bbmri-eric.eu/CodeSystem/miabis-collection-sample-type-cs",
  "version": "1.3.0",
  "name": "CollectionSampleTypeCS",
  "title": "MIABIS Collection Sample Type Code System",
  "status": "active",
  "date": "2026-06-22T09:58:20+00:00",
  "publisher": "BBMRI-ERIC",
  "contact": [
    {
      "name": "BBMRI-ERIC",
      "telecom": [
        {
          "system": "url",
          "value": "http://bbmri-eric.eu"
        },
        {
          "system": "email",
          "value": "contact@bbmri-eric.eu"
        }
      ]
    },
    {
      "name": "Radovan Tomasik",
      "telecom": [
        {
          "system": "email",
          "value": "radovan.tomasik@bbmri-eric.eu",
          "use": "work"
        }
      ]
    }
  ],
  "description": "Codes for the collection sample types of the provided samples",
  "content": "complete",
  "count": 22,
  "concept": [
    {
      "code": "Blood",
      "display": "Blood"
    },
    {
      "code": "BuffyCoat",
      "display": "Buffy Coat"
    },
    {
      "code": "CancerCellLine",
      "display": "Cancer Cell Lines"
    },
    {
      "code": "DNA",
      "display": "DNA"
    },
    {
      "code": "EntireOrgan",
      "display": "Entire Organ"
    },
    {
      "code": "Faeces",
      "display": "Faeces"
    },
    {
      "code": "EmbryoFetal",
      "display": "Embryo or Fetal tissue"
    },
    {
      "code": "ImmortalizedCellLine",
      "display": "Immortalized Cell Lines"
    },
    {
      "code": "IsolatedMicrobe",
      "display": "Isolated Microbes"
    },
    {
      "code": "OtherBodyFluid",
      "display": "Other Body Fluid"
    },
    {
      "code": "Plasma",
      "display": "Plasma"
    },
    {
      "code": "PrimaryCells",
      "display": "Primary Cells"
    },
    {
      "code": "PostMortemTissue",
      "display": "Post-Mortem Tissue"
    },
    {
      "code": "RNA",
      "display": "RNA"
    },
    {
      "code": "Saliva",
      "display": "Saliva"
    },
    {
      "code": "Serum",
      "display": "Serum"
    },
    {
      "code": "SpecimenEnvironment",
      "display": "Specimen from Environment or from food"
    },
    {
      "code": "Swab",
      "display": "Swab"
    },
    {
      "code": "TissueFrozen",
      "display": "Tissue (frozen)"
    },
    {
      "code": "TissueFFPE",
      "display": "Tissue (FFPE)"
    },
    {
      "code": "Urine",
      "display": "Urine"
    },
    {
      "code": "Other",
      "display": "Other"
    }
  ]
}