FHIR IG analytics
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Source1
{
"resourceType": "StructureDefinition",
"id": "nfdi4health-ex-mds-data-source",
"url": "https://www.nfdi4health.de/fhir/metadataschema/StructureDefinition/nfdi4health-ex-mds-data-source",
"version": "0.9",
"name": "NFDI4Health_EX_MDS_Data_Source",
"title": "NFDI4Health EX MDS Data Source",
"status": "draft",
"publisher": "NFDI4Health",
"contact": [
{
"telecom": [
{
"system": "url",
"value": "https://www.nfdi4health.de"
}
]
}
],
"description": "Extension informing about data sources from which data are generated or extracted.",
"fhirVersion": "4.0.1",
"mapping": [
{
"identity": "rim",
"uri": "http://hl7.org/v3",
"name": "RIM Mapping"
},
{
"identity": "NFDI4Health",
"name": "NFDI4Health to FHIR Mapping"
}
],
"kind": "complex-type",
"abstract": false,
"context": [
{
"type": "element",
"expression": "ResearchStudy"
},
{
"type": "element",
"expression": "Library"
}
],
"type": "Extension",
"baseDefinition": "http://hl7.org/fhir/StructureDefinition/Extension",
"derivation": "constraint",
"differential": {
"element": [
{
"id": "Extension",
"path": "Extension",
"short": "Data sources of the [RESOURCE]",
"definition": "Group of items providing information about data sources from which the data of the [RESOURCE] are generated or extracted.",
"max": "1",
"mapping": [
{
"identity": "NFDI4Health",
"map": "Design.dataSource"
}
]
},
{
"id": "Extension.extension:general",
"path": "Extension.extension",
"sliceName": "general",
"short": "Type(s) of data sources",
"definition": "Different types of data sources from which the data of the [RESOURCE] are generated or extracted.",
"comment": "Short input help: Select all that apply.",
"min": 0,
"max": "*",
"mapping": [
{
"identity": "NFDI4Health",
"map": "Design.dataSource.general"
}
]
},
{
"id": "Extension.extension:general.extension",
"path": "Extension.extension.extension",
"max": "0"
},
{
"id": "Extension.extension:general.url",
"path": "Extension.extension.url",
"fixedUri": "general"
},
{
"id": "Extension.extension:general.value[x]",
"path": "Extension.extension.value[x]",
"min": 1,
"type": [
{
"code": "Coding"
}
],
"binding": {
"strength": "required",
"valueSet": "https://www.nfdi4health.de/fhir/metadataschema/ValueSet/nfdi4health-vs-mds-study-data-sources-general-nci-local",
"description": "Value set defining codes to specify the general data sources."
}
},
{
"id": "Extension.extension:general.value[x].system",
"path": "Extension.extension.value[x].system",
"min": 1
},
{
"id": "Extension.extension:general.value[x].code",
"path": "Extension.extension.value[x].code",
"min": 1
},
{
"id": "Extension.extension:biosamples",
"path": "Extension.extension",
"sliceName": "biosamples",
"short": "Biosamples collected",
"definition": "Specification of biosamples collected in the [RESOURCE].",
"comment": "Short input help: Select all that apply. Cardinality 0..*, if Design.dataSource.general == 'Biological samples'; otherwise 0..0",
"min": 0,
"max": "*",
"mapping": [
{
"identity": "NFDI4Health",
"map": "Design.dataSource.biosamples"
}
]
},
{
"id": "Extension.extension:biosamples.extension",
"path": "Extension.extension.extension",
"max": "0"
},
{
"id": "Extension.extension:biosamples.url",
"path": "Extension.extension.url",
"fixedUri": "biosamples"
},
{
"id": "Extension.extension:biosamples.value[x]",
"path": "Extension.extension.value[x]",
"min": 1,
"type": [
{
"code": "Coding"
}
],
"binding": {
"strength": "required",
"valueSet": "https://www.nfdi4health.de/fhir/metadataschema/ValueSet/nfdi4health-vs-mds-study-ds-biosamples-sct-nci",
"description": "Value set defining codes to specify a biosample data source."
}
},
{
"id": "Extension.extension:biosamples.value[x].system",
"path": "Extension.extension.value[x].system",
"min": 1
},
{
"id": "Extension.extension:biosamples.value[x].code",
"path": "Extension.extension.value[x].code",
"min": 1
},
{
"id": "Extension.extension:imaging",
"path": "Extension.extension",
"sliceName": "imaging",
"short": "Imaging data collected",
"definition": "Specification of imaging data collected in the [RESOURCE].",
"comment": "Short input help: Select all that apply. Cardinality 0..*, if Design.dataSource.general == 'Imaging data'; otherwise 0..0",
"min": 0,
"max": "*",
"mapping": [
{
"identity": "NFDI4Health",
"map": "Design.dataSource.imaging"
}
]
},
{
"id": "Extension.extension:imaging.extension",
"path": "Extension.extension.extension",
"max": "0"
},
{
"id": "Extension.extension:imaging.url",
"path": "Extension.extension.url",
"fixedUri": "imaging"
},
{
"id": "Extension.extension:imaging.value[x]",
"path": "Extension.extension.value[x]",
"min": 1,
"type": [
{
"code": "Coding"
}
],
"binding": {
"strength": "required",
"valueSet": "https://www.nfdi4health.de/fhir/metadataschema/ValueSet/nfdi4health-vs-mds-study-data-sources-imaging-nci",
"description": "Value set defining codes to specify an imaging data source."
}
},
{
"id": "Extension.extension:imaging.value[x].system",
"path": "Extension.extension.value[x].system",
"min": 1
},
{
"id": "Extension.extension:imaging.value[x].code",
"path": "Extension.extension.value[x].code",
"min": 1
},
{
"id": "Extension.extension:omics",
"path": "Extension.extension",
"sliceName": "omics",
"short": "Omics technology used",
"definition": "Specification of omics technology applied in the [RESOURCE].",
"comment": "Short input help: Select all that apply.",
"min": 0,
"max": "*",
"mapping": [
{
"identity": "NFDI4Health",
"map": "Design.dataSource.omics"
}
]
},
{
"id": "Extension.extension:omics.extension",
"path": "Extension.extension.extension",
"max": "0"
},
{
"id": "Extension.extension:omics.url",
"path": "Extension.extension.url",
"fixedUri": "omics"
},
{
"id": "Extension.extension:omics.value[x]",
"path": "Extension.extension.value[x]",
"min": 1,
"type": [
{
"code": "Coding"
}
],
"binding": {
"strength": "required",
"valueSet": "https://www.nfdi4health.de/fhir/metadataschema/ValueSet/nfdi4health-vs-mds-study-data-sources-omics-nci",
"description": "NFDI4Health VS MDS Study Data Sources Omics [NCI, UMLS]"
}
},
{
"id": "Extension.extension:omics.value[x].system",
"path": "Extension.extension.value[x].system",
"min": 1
},
{
"id": "Extension.extension:omics.value[x].code",
"path": "Extension.extension.value[x].code",
"min": 1
},
{
"id": "Extension.extension:description",
"path": "Extension.extension",
"sliceName": "description",
"short": "Additional information about data sources",
"definition": "If needed, additional descriptive information about the data sources of the [RESOURCE], e.g. indication of the data source(s) not listed in the field 'Type(s) of data sources' or a more detailed description of the selected data sources.",
"comment": "Short input help: You can indicate here other data source(s) not listed in the field 'Type(s) of data sources' or provide a more detailed description of the selected data sources.",
"min": 0,
"max": "1",
"mapping": [
{
"identity": "NFDI4Health",
"map": "Design.dataSource.description"
}
]
},
{
"id": "Extension.extension:description.extension",
"path": "Extension.extension.extension",
"max": "0"
},
{
"id": "Extension.extension:description.url",
"path": "Extension.extension.url",
"fixedUri": "description"
},
{
"id": "Extension.extension:description.value[x]",
"path": "Extension.extension.value[x]",
"type": [
{
"code": "string"
}
]
},
{
"id": "Extension.url",
"path": "Extension.url",
"fixedUri": "https://www.nfdi4health.de/fhir/metadataschema/StructureDefinition/nfdi4health-ex-mds-data-source"
},
{
"id": "Extension.value[x]",
"path": "Extension.value[x]",
"max": "0"
}
]
}
}
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