FHIR IG analytics| Package | de.medizininformatikinitiative.kerndatensatz.mtb |
| Resource Type | StructureDefinition |
| Id | StructureDefinition-dnpm-lm-ngs-report.json |
| FHIR Version | R4 |
| Source | https://medizininformatik-initiative.github.io/kerndatensatzmodul-molekulares-tumorboard/2027.0.0-ballot.1/StructureDefinition-dnpm-lm-ngs-report.html |
| URL | https://dnpm-dip.net/fhir/StructureDefinition/dnpm-lm-ngs-report |
| Version | 2027.0.0-ballot.1 |
| Status | active |
| Date | 2026-09-15T17:39:31+00:00 |
| Name | DNPM_LM_NGSReport |
| Title | DNPM NGS Report |
| Realm | de |
| Description | Logical Model for a single entry in the DNPM DIP MTB Patient Record ngsReports array |
| Type | https://dnpm-dip.net/fhir/StructureDefinition/dnpm-lm-ngs-report |
| Kind | logical |
No resources found
No resources found
Note: links and images are rebased to the (stated) source
English
Generated Narrative: StructureDefinition dnpm-lm-ngs-report
| Name | Flags | Card. | Type | Description & Constraints |
|---|---|---|---|---|
  dnpm-lm-ngs-report | 0..* | Element | DNPM NGS Report Elements defined in Ancestors:@id, extension | |
  dnpmId | 1..1 | string | NGS Report UUID (DNPM internal ID) | |
 patient | 1..1 | BackboneElement | Patient reference | |
 @id | 1..1 | string | Patient ID | |
 type | 1..1 | string | Reference type (Patient) | |
| specimen | 1..1 | BackboneElement | Tumor specimen reference | |
| @id | 1..1 | string | Specimen ID | |
| type | 1..1 | string | Reference type (TumorSpecimen) | |
| issuedOn | 1..1 | string | Report issue date (YYYY-MM-DD) | |
| type | 1..1 | BackboneElement | NGS analysis type (e.g. exome, panel) | |
| code | 1..1 | string | Type code | |
| display | 0..1 | string | Type display | |
| system | 1..1 | string | Type system URI | |
| metadata | 0..1 | BackboneElement | NGS run metadata | |
| referenceGenome | 0..1 | BackboneElement | Reference genome used | |
| code | 1..1 | string | Genome build code (e.g. GRCh38) | |
| display | 0..1 | string | Genome build display | |
| system | 1..1 | string | Genome build system URI | |
| sequencer | 0..1 | BackboneElement | Sequencer instrument | |
| code | 1..1 | string | Sequencer code | |
| display | 0..1 | string | Sequencer display | |
| system | 1..1 | string | Sequencer system URI | |
| kitManufacturer | 0..1 | string | Kit manufacturer name | |
| kitType | 0..1 | string | Kit type name | |
| pipeline | 0..1 | string | Bioinformatics pipeline identifier | |
| tumorCellContent | 0..1 | BackboneElement | Tumor cell content metadata estimate | |
 method | 0..1 | BackboneElement | Estimation method | |
| code | 1..1 | string | Method code | |
| display | 0..1 | string | Method display | |
| system | 1..1 | string | Method system URI | |
| value | 1..1 | decimal | Tumor cell content fraction (0.0 – 1.0) | |
| results | 1..1 | BackboneElement | NGS analysis results | |
| tumorCellContent | 0..1 | BackboneElement | Bioinformatically determined tumor cell content | |
| @id | 1..1 | string | Result ID | |
| patient | 1..1 | BackboneElement | Patient reference | |
| @id | 1..1 | string | Patient ID | |
| type | 1..1 | string | Reference type | |
| specimen | 1..1 | BackboneElement | Specimen reference | |
| @id | 1..1 | string | Specimen ID | |
| type | 1..1 | string | Reference type | |
| method | 1..1 | BackboneElement | Determination method | |
| code | 1..1 | string | Method code | |
| display | 0..1 | string | Method display | |
| system | 1..1 | string | Method system URI | |
| value | 1..1 | decimal | Tumor cell content fraction (0.0 – 1.0) | |
| tmb | 0..1 | BackboneElement | Tumor Mutational Burden | |
| @id | 1..1 | string | TMB result ID | |
| patient | 1..1 | BackboneElement | Patient reference | |
| @id | 1..1 | string | Patient ID | |
| type | 1..1 | string | Reference type | |
| specimen | 1..1 | BackboneElement | Specimen reference | |
| @id | 1..1 | string | Specimen ID | |
| type | 1..1 | string | Reference type | |
| value | 1..1 | BackboneElement | TMB quantity | |
| value | 1..1 | decimal | Numeric TMB value | |
| unit | 1..1 | string | Unit (e.g. Mutations per megabase) | |
| interpretation | 0..1 | BackboneElement | TMB interpretation | |
| code | 1..1 | string | Interpretation code (e.g. high) | |
| display | 0..1 | string | Interpretation display | |
| system | 1..1 | string | Interpretation system URI | |
| brcaness | 0..1 | BackboneElement | BRCAness score | |
| @id | 1..1 | string | BRCAness result ID | |
| patient | 1..1 | BackboneElement | Patient reference | |
| @id | 1..1 | string | Patient ID | |
| type | 1..1 | string | Reference type | |
| specimen | 1..1 | BackboneElement | Specimen reference | |
| @id | 1..1 | string | Specimen ID | |
| type | 1..1 | string | Reference type | |
| value | 1..1 | decimal | BRCAness score (0.0 – 1.0) | |
| confidenceRange | 0..1 | BackboneElement | Confidence range | |
| min | 1..1 | decimal | Minimum confidence value | |
| max | 1..1 | decimal | Maximum confidence value | |
| hrdScore | 0..1 | BackboneElement | Homologous Recombination Deficiency Score | |
| @id | 1..1 | string | HRD result ID | |
| patient | 1..1 | BackboneElement | Patient reference | |
| @id | 1..1 | string | Patient ID | |
| type | 1..1 | string | Reference type | |
| specimen | 1..1 | BackboneElement | Specimen reference | |
| @id | 1..1 | string | Specimen ID | |
| type | 1..1 | string | Reference type | |
| value | 1..1 | decimal | HRD composite score | |
| components | 0..1 | BackboneElement | HRD component scores | |
| lst | 0..1 | decimal | Large-scale state transitions (LST) | |
| loh | 0..1 | decimal | Loss of heterozygosity (LOH) | |
| tai | 0..1 | decimal | Telomeric allelic imbalance (TAI) | |
| interpretation | 0..1 | BackboneElement | HRD interpretation | |
| code | 1..1 | string | Interpretation code (e.g. low) | |
| display | 0..1 | string | Interpretation display | |
| system | 1..1 | string | Interpretation system URI | |
| simpleVariants | 0..* | BackboneElement | Simple variants (SNV / small indels) | |
| @id | 1..1 | string | Variant ID | |
| patient | 1..1 | BackboneElement | Patient reference | |
| @id | 1..1 | string | Patient ID | |
| type | 1..1 | string | Reference type | |
| externalIds | 0..* | BackboneElement | External variant identifiers (e.g. dbSNP rs-number) | |
| value | 1..1 | string | Identifier value | |
| system | 1..1 | string | Identifier system URI | |
| chromosome | 1..1 | string | Chromosome (e.g. chr4) | |
| gene | 1..1 | BackboneElement | Affected gene | |
| code | 1..1 | string | HGNC gene code | |
| display | 0..1 | string | Gene symbol | |
| system | 1..1 | string | Gene nomenclature system URI | |
| localization | 0..* | BackboneElement | Variant localisation in gene | |
| code | 1..1 | string | Localisation code | |
| display | 0..1 | string | Localisation display | |
| system | 1..1 | string | Localisation system URI | |
| transcriptId | 0..1 | BackboneElement | Transcript identifier | |
| value | 1..1 | string | Transcript ID value (e.g. ENST...) | |
| system | 1..1 | string | Transcript system URI | |
| exonId | 0..1 | string | Exon identifier | |
| position | 0..1 | BackboneElement | Genomic position (1-based) | |
| start | 1..1 | integer | Start position | |
| end | 0..1 | integer | End position | |
| altAllele | 1..1 | string | Alternate allele | |
| refAllele | 1..1 | string | Reference allele | |
| dnaChange | 0..1 | string | cDNA / DNA change in HGVS notation (e.g. c.570G>T) | |
| proteinChange | 0..1 | string | Protein change in HGVS notation (e.g. p.(Glu125Asp)) | |
| readDepth | 0..1 | integer | Read depth at variant position | |
| allelicFrequency | 0..1 | decimal | Variant allelic frequency | |
| interpretation | 0..1 | BackboneElement | ClinVar / clinical interpretation | |
| code | 1..1 | string | Interpretation code | |
| display | 0..1 | string | Interpretation display | |
| system | 1..1 | string | Interpretation system URI | |
| copyNumberVariants | 0..* | BackboneElement | Copy number variants (CNV) | |
| @id | 1..1 | string | CNV ID | |
| patient | 1..1 | BackboneElement | Patient reference | |
| @id | 1..1 | string | Patient ID | |
| type | 1..1 | string | Reference type | |
| chromosome | 1..1 | string | Chromosome (e.g. chr7) | |
| localization | 0..* | BackboneElement | CNV localisation | |
| code | 1..1 | string | Localisation code | |
| display | 0..1 | string | Localisation display | |
| system | 1..1 | string | Localisation system URI | |
| startRange | 0..1 | BackboneElement | Start position range | |
| start | 1..1 | integer | Range start | |
| end | 1..1 | integer | Range end | |
| endRange | 0..1 | BackboneElement | End position range | |
| start | 1..1 | integer | Range start | |
| end | 1..1 | integer | Range end | |
| totalCopyNumber | 0..1 | integer | Total copy number | |
| relativeCopyNumber | 0..1 | decimal | Relative copy number | |
| cnA | 0..1 | integer | Copy number allele A | |
| cnB | 0..1 | integer | Copy number allele B | |
| reportedAffectedGenes | 0..* | BackboneElement | Reported affected genes | |
| code | 1..1 | string | HGNC gene code | |
| display | 0..1 | string | Gene symbol | |
| system | 1..1 | string | Gene nomenclature system URI | |
| focality | 0..1 | BackboneElement | CNV focality | |
| code | 1..1 | string | Focality code (e.g. focal) | |
| display | 0..1 | string | Focality display | |
| system | 1..1 | string | Focality system URI | |
| type | 1..1 | BackboneElement | CNV type (gain / loss) | |
| code | 1..1 | string | CNV type code | |
| display | 0..1 | string | CNV type display | |
| system | 1..1 | string | CNV type system URI | |
| dnaFusions | 0..* | BackboneElement | DNA-level gene fusions | |
| @id | 1..1 | string | DNA fusion ID | |
| patient | 1..1 | BackboneElement | Patient reference | |
| @id | 1..1 | string | Patient ID | |
| type | 1..1 | string | Reference type | |
| localization | 0..* | BackboneElement | Fusion localisation | |
| code | 1..1 | string | Localisation code | |
| display | 0..1 | string | Localisation display | |
| system | 1..1 | string | Localisation system URI | |
| fusionPartner5prime | 0..1 | BackboneElement | 5-prime fusion partner | |
| gene | 1..1 | BackboneElement | 5-prime partner gene | |
| code | 1..1 | string | HGNC gene code | |
| display | 0..1 | string | Gene symbol | |
| system | 1..1 | string | Gene nomenclature system URI | |
| position | 1..1 | integer | Breakpoint position | |
| fusionPartner3prime | 0..1 | BackboneElement | 3-prime fusion partner | |
| gene | 1..1 | BackboneElement | 3-prime partner gene | |
| code | 1..1 | string | HGNC gene code | |
| display | 0..1 | string | Gene symbol | |
| system | 1..1 | string | Gene nomenclature system URI | |
| position | 1..1 | integer | Breakpoint position | |
| reportedNumReads | 0..1 | integer | Number of reads supporting fusion | |
| rnaFusions | 0..* | BackboneElement | RNA-level gene fusions | |
| @id | 1..1 | string | RNA fusion ID | |
| patient | 1..1 | BackboneElement | Patient reference | |
| @id | 1..1 | string | Patient ID | |
| type | 1..1 | string | Reference type | |
| externalIds | 0..* | BackboneElement | External identifiers (e.g. COSMIC fusion ID) | |
| value | 1..1 | string | Identifier value | |
| system | 1..1 | string | Identifier system URI | |
| localization | 0..* | BackboneElement | Fusion localisation | |
| code | 1..1 | string | Localisation code | |
| display | 0..1 | string | Localisation display | |
| system | 1..1 | string | Localisation system URI | |
| fusionPartner5prime | 0..1 | BackboneElement | 5-prime fusion partner | |
| gene | 1..1 | BackboneElement | 5-prime partner gene | |
| code | 1..1 | string | HGNC gene code | |
| display | 0..1 | string | Gene symbol | |
| system | 1..1 | string | Gene nomenclature system URI | |
| transcript | 0..1 | BackboneElement | 5-prime transcript | |
| value | 1..1 | string | Transcript ID (e.g. ENST...) | |
| system | 1..1 | string | Transcript system URI | |
| exon | 0..1 | string | Exon identifier | |
| position | 1..1 | integer | Breakpoint position | |
| strand | 0..1 | string | Strand (+ or -) | |
| fusionPartner3prime | 0..1 | BackboneElement | 3-prime fusion partner | |
| gene | 1..1 | BackboneElement | 3-prime partner gene | |
| code | 1..1 | string | HGNC gene code | |
| display | 0..1 | string | Gene symbol | |
| system | 1..1 | string | Gene nomenclature system URI | |
| transcript | 0..1 | BackboneElement | 3-prime transcript | |
| value | 1..1 | string | Transcript ID (e.g. ENST...) | |
| system | 1..1 | string | Transcript system URI | |
| exon | 0..1 | string | Exon identifier | |
| position | 1..1 | integer | Breakpoint position | |
| strand | 0..1 | string | Strand (+ or -) | |
| effect | 0..1 | BackboneElement | RNA fusion effect | |
| code | 1..1 | string | Effect code (e.g. in-frame) | |
| display | 0..1 | string | Effect display | |
| system | 1..1 | string | Effect system URI | |
| reportedNumReads | 0..1 | integer | Number of reads supporting fusion | |
| Documentation for this format | ||||
German
Generated Narrative: StructureDefinition dnpm-lm-ngs-report
| Name | Flags | Card. | Type | Description & Constraints |
|---|---|---|---|---|
| dnpm-lm-ngs-report | 0..* | Element | DNPM NGS Report Elements defined in Ancestors:@id, extension | |
| dnpmId | 1..1 | string | NGS Report UUID (DNPM internal ID) | |
| patient | 1..1 | BackboneElement | Patient reference | |
| @id | 1..1 | string | Patient ID | |
| type | 1..1 | string | Reference type (Patient) | |
| specimen | 1..1 | BackboneElement | Tumor specimen reference | |
| @id | 1..1 | string | Specimen ID | |
| type | 1..1 | string | Reference type (TumorSpecimen) | |
| issuedOn | 1..1 | string | Report issue date (YYYY-MM-DD) | |
| type | 1..1 | BackboneElement | NGS analysis type (e.g. exome, panel) | |
| code | 1..1 | string | Type code | |
| display | 0..1 | string | Type display | |
| system | 1..1 | string | Type system URI | |
| metadata | 0..1 | BackboneElement | NGS run metadata | |
| referenceGenome | 0..1 | BackboneElement | Reference genome used | |
| code | 1..1 | string | Genome build code (e.g. GRCh38) | |
| display | 0..1 | string | Genome build display | |
| system | 1..1 | string | Genome build system URI | |
| sequencer | 0..1 | BackboneElement | Sequencer instrument | |
| code | 1..1 | string | Sequencer code | |
| display | 0..1 | string | Sequencer display | |
| system | 1..1 | string | Sequencer system URI | |
| kitManufacturer | 0..1 | string | Kit manufacturer name | |
| kitType | 0..1 | string | Kit type name | |
| pipeline | 0..1 | string | Bioinformatics pipeline identifier | |
| tumorCellContent | 0..1 | BackboneElement | Tumor cell content metadata estimate | |
| method | 0..1 | BackboneElement | Estimation method | |
| code | 1..1 | string | Method code | |
| display | 0..1 | string | Method display | |
| system | 1..1 | string | Method system URI | |
| value | 1..1 | decimal | Tumor cell content fraction (0.0 – 1.0) | |
| results | 1..1 | BackboneElement | NGS analysis results | |
| tumorCellContent | 0..1 | BackboneElement | Bioinformatically determined tumor cell content | |
| @id | 1..1 | string | Result ID | |
| patient | 1..1 | BackboneElement | Patient reference | |
| @id | 1..1 | string | Patient ID | |
| type | 1..1 | string | Reference type | |
| specimen | 1..1 | BackboneElement | Specimen reference | |
| @id | 1..1 | string | Specimen ID | |
| type | 1..1 | string | Reference type | |
| method | 1..1 | BackboneElement | Determination method | |
| code | 1..1 | string | Method code | |
| display | 0..1 | string | Method display | |
| system | 1..1 | string | Method system URI | |
| value | 1..1 | decimal | Tumor cell content fraction (0.0 – 1.0) | |
| tmb | 0..1 | BackboneElement | Tumor Mutational Burden | |
| @id | 1..1 | string | TMB result ID | |
| patient | 1..1 | BackboneElement | Patient reference | |
| @id | 1..1 | string | Patient ID | |
| type | 1..1 | string | Reference type | |
| specimen | 1..1 | BackboneElement | Specimen reference | |
| @id | 1..1 | string | Specimen ID | |
| type | 1..1 | string | Reference type | |
| value | 1..1 | BackboneElement | TMB quantity | |
| value | 1..1 | decimal | Numeric TMB value | |
| unit | 1..1 | string | Unit (e.g. Mutations per megabase) | |
| interpretation | 0..1 | BackboneElement | TMB interpretation | |
| code | 1..1 | string | Interpretation code (e.g. high) | |
| display | 0..1 | string | Interpretation display | |
| system | 1..1 | string | Interpretation system URI | |
| brcaness | 0..1 | BackboneElement | BRCAness score | |
| @id | 1..1 | string | BRCAness result ID | |
| patient | 1..1 | BackboneElement | Patient reference | |
| @id | 1..1 | string | Patient ID | |
| type | 1..1 | string | Reference type | |
| specimen | 1..1 | BackboneElement | Specimen reference | |
| @id | 1..1 | string | Specimen ID | |
| type | 1..1 | string | Reference type | |
| value | 1..1 | decimal | BRCAness score (0.0 – 1.0) | |
| confidenceRange | 0..1 | BackboneElement | Confidence range | |
| min | 1..1 | decimal | Minimum confidence value | |
| max | 1..1 | decimal | Maximum confidence value | |
| hrdScore | 0..1 | BackboneElement | Homologous Recombination Deficiency Score | |
| @id | 1..1 | string | HRD result ID | |
| patient | 1..1 | BackboneElement | Patient reference | |
| @id | 1..1 | string | Patient ID | |
| type | 1..1 | string | Reference type | |
| specimen | 1..1 | BackboneElement | Specimen reference | |
| @id | 1..1 | string | Specimen ID | |
| type | 1..1 | string | Reference type | |
| value | 1..1 | decimal | HRD composite score | |
| components | 0..1 | BackboneElement | HRD component scores | |
| lst | 0..1 | decimal | Large-scale state transitions (LST) | |
| loh | 0..1 | decimal | Loss of heterozygosity (LOH) | |
| tai | 0..1 | decimal | Telomeric allelic imbalance (TAI) | |
| interpretation | 0..1 | BackboneElement | HRD interpretation | |
| code | 1..1 | string | Interpretation code (e.g. low) | |
| display | 0..1 | string | Interpretation display | |
| system | 1..1 | string | Interpretation system URI | |
| simpleVariants | 0..* | BackboneElement | Simple variants (SNV / small indels) | |
| @id | 1..1 | string | Variant ID | |
| patient | 1..1 | BackboneElement | Patient reference | |
| @id | 1..1 | string | Patient ID | |
| type | 1..1 | string | Reference type | |
| externalIds | 0..* | BackboneElement | External variant identifiers (e.g. dbSNP rs-number) | |
| value | 1..1 | string | Identifier value | |
| system | 1..1 | string | Identifier system URI | |
| chromosome | 1..1 | string | Chromosome (e.g. chr4) | |
| gene | 1..1 | BackboneElement | Affected gene | |
| code | 1..1 | string | HGNC gene code | |
| display | 0..1 | string | Gene symbol | |
| system | 1..1 | string | Gene nomenclature system URI | |
| localization | 0..* | BackboneElement | Variant localisation in gene | |
| code | 1..1 | string | Localisation code | |
| display | 0..1 | string | Localisation display | |
| system | 1..1 | string | Localisation system URI | |
| transcriptId | 0..1 | BackboneElement | Transcript identifier | |
| value | 1..1 | string | Transcript ID value (e.g. ENST...) | |
| system | 1..1 | string | Transcript system URI | |
| exonId | 0..1 | string | Exon identifier | |
| position | 0..1 | BackboneElement | Genomic position (1-based) | |
| start | 1..1 | integer | Start position | |
| end | 0..1 | integer | End position | |
| altAllele | 1..1 | string | Alternate allele | |
| refAllele | 1..1 | string | Reference allele | |
| dnaChange | 0..1 | string | cDNA / DNA change in HGVS notation (e.g. c.570G>T) | |
| proteinChange | 0..1 | string | Protein change in HGVS notation (e.g. p.(Glu125Asp)) | |
| readDepth | 0..1 | integer | Read depth at variant position | |
| allelicFrequency | 0..1 | decimal | Variant allelic frequency | |
| interpretation | 0..1 | BackboneElement | ClinVar / clinical interpretation | |
| code | 1..1 | string | Interpretation code | |
| display | 0..1 | string | Interpretation display | |
| system | 1..1 | string | Interpretation system URI | |
| copyNumberVariants | 0..* | BackboneElement | Copy number variants (CNV) | |
| @id | 1..1 | string | CNV ID | |
| patient | 1..1 | BackboneElement | Patient reference | |
| @id | 1..1 | string | Patient ID | |
| type | 1..1 | string | Reference type | |
| chromosome | 1..1 | string | Chromosome (e.g. chr7) | |
| localization | 0..* | BackboneElement | CNV localisation | |
| code | 1..1 | string | Localisation code | |
| display | 0..1 | string | Localisation display | |
| system | 1..1 | string | Localisation system URI | |
| startRange | 0..1 | BackboneElement | Start position range | |
| start | 1..1 | integer | Range start | |
| end | 1..1 | integer | Range end | |
| endRange | 0..1 | BackboneElement | End position range | |
| start | 1..1 | integer | Range start | |
| end | 1..1 | integer | Range end | |
| totalCopyNumber | 0..1 | integer | Total copy number | |
| relativeCopyNumber | 0..1 | decimal | Relative copy number | |
| cnA | 0..1 | integer | Copy number allele A | |
| cnB | 0..1 | integer | Copy number allele B | |
| reportedAffectedGenes | 0..* | BackboneElement | Reported affected genes | |
| code | 1..1 | string | HGNC gene code | |
| display | 0..1 | string | Gene symbol | |
| system | 1..1 | string | Gene nomenclature system URI | |
| focality | 0..1 | BackboneElement | CNV focality | |
| code | 1..1 | string | Focality code (e.g. focal) | |
| display | 0..1 | string | Focality display | |
| system | 1..1 | string | Focality system URI | |
| type | 1..1 | BackboneElement | CNV type (gain / loss) | |
| code | 1..1 | string | CNV type code | |
| display | 0..1 | string | CNV type display | |
| system | 1..1 | string | CNV type system URI | |
| dnaFusions | 0..* | BackboneElement | DNA-level gene fusions | |
| @id | 1..1 | string | DNA fusion ID | |
| patient | 1..1 | BackboneElement | Patient reference | |
| @id | 1..1 | string | Patient ID | |
| type | 1..1 | string | Reference type | |
| localization | 0..* | BackboneElement | Fusion localisation | |
| code | 1..1 | string | Localisation code | |
| display | 0..1 | string | Localisation display | |
| system | 1..1 | string | Localisation system URI | |
| fusionPartner5prime | 0..1 | BackboneElement | 5-prime fusion partner | |
| gene | 1..1 | BackboneElement | 5-prime partner gene | |
| code | 1..1 | string | HGNC gene code | |
| display | 0..1 | string | Gene symbol | |
| system | 1..1 | string | Gene nomenclature system URI | |
| position | 1..1 | integer | Breakpoint position | |
| fusionPartner3prime | 0..1 | BackboneElement | 3-prime fusion partner | |
| gene | 1..1 | BackboneElement | 3-prime partner gene | |
| code | 1..1 | string | HGNC gene code | |
| display | 0..1 | string | Gene symbol | |
| system | 1..1 | string | Gene nomenclature system URI | |
| position | 1..1 | integer | Breakpoint position | |
| reportedNumReads | 0..1 | integer | Number of reads supporting fusion | |
| rnaFusions | 0..* | BackboneElement | RNA-level gene fusions | |
| @id | 1..1 | string | RNA fusion ID | |
| patient | 1..1 | BackboneElement | Patient reference | |
| @id | 1..1 | string | Patient ID | |
| type | 1..1 | string | Reference type | |
| externalIds | 0..* | BackboneElement | External identifiers (e.g. COSMIC fusion ID) | |
| value | 1..1 | string | Identifier value | |
| system | 1..1 | string | Identifier system URI | |
| localization | 0..* | BackboneElement | Fusion localisation | |
| code | 1..1 | string | Localisation code | |
| display | 0..1 | string | Localisation display | |
| system | 1..1 | string | Localisation system URI | |
| fusionPartner5prime | 0..1 | BackboneElement | 5-prime fusion partner | |
| gene | 1..1 | BackboneElement | 5-prime partner gene | |
| code | 1..1 | string | HGNC gene code | |
| display | 0..1 | string | Gene symbol | |
| system | 1..1 | string | Gene nomenclature system URI | |
| transcript | 0..1 | BackboneElement | 5-prime transcript | |
| value | 1..1 | string | Transcript ID (e.g. ENST...) | |
| system | 1..1 | string | Transcript system URI | |
| exon | 0..1 | string | Exon identifier | |
| position | 1..1 | integer | Breakpoint position | |
| strand | 0..1 | string | Strand (+ or -) | |
| fusionPartner3prime | 0..1 | BackboneElement | 3-prime fusion partner | |
| gene | 1..1 | BackboneElement | 3-prime partner gene | |
| code | 1..1 | string | HGNC gene code | |
| display | 0..1 | string | Gene symbol | |
| system | 1..1 | string | Gene nomenclature system URI | |
| transcript | 0..1 | BackboneElement | 3-prime transcript | |
| value | 1..1 | string | Transcript ID (e.g. ENST...) | |
| system | 1..1 | string | Transcript system URI | |
| exon | 0..1 | string | Exon identifier | |
| position | 1..1 | integer | Breakpoint position | |
| strand | 0..1 | string | Strand (+ or -) | |
| effect | 0..1 | BackboneElement | RNA fusion effect | |
| code | 1..1 | string | Effect code (e.g. in-frame) | |
| display | 0..1 | string | Effect display | |
| system | 1..1 | string | Effect system URI | |
| reportedNumReads | 0..1 | integer | Number of reads supporting fusion | |
| Documentation for this format | ||||
FHIR
FHIRsmith{
"resourceType": "StructureDefinition",
"id": "dnpm-lm-ngs-report",
"text": {
"status": "extensions",
"div": "<!-- snip (see above) -->"
},
"url": "https://dnpm-dip.net/fhir/StructureDefinition/dnpm-lm-ngs-report",
"version": "2027.0.0-ballot.1",
"name": "DNPM_LM_NGSReport",
"title": "DNPM NGS Report",
"status": "active",
"date": "2026-09-15T17:39:31+00:00",
"publisher": "Medizininformatik-Initiative",
"contact": [
{
"name": "Medizininformatik-Initiative",
"telecom": [
{
"system": "url",
"value": "https://www.medizininformatik-initiative.de"
}
]
}
],
"description": "Logical Model for a single entry in the DNPM DIP MTB Patient Record ngsReports array",
"jurisdiction": [
{
"coding": [
{
"system": "urn:iso:std:iso:3166",
"code": "DE",
"display": "Germany"
}
]
}
],
"fhirVersion": "4.0.1",
"kind": "logical",
"abstract": false,
"type": "https://dnpm-dip.net/fhir/StructureDefinition/dnpm-lm-ngs-report",
"baseDefinition": "http://hl7.org/fhir/StructureDefinition/Element",
"derivation": "specialization",
"snapshot": {
"extension": [
{
"url": "http://hl7.org/fhir/tools/StructureDefinition/snapshot-base-version",
"valueString": "4.0.1"
}
],
"element": [
{
"id": "dnpm-lm-ngs-report",
"path": "dnpm-lm-ngs-report",
"short": "DNPM NGS Report",
"definition": "Logical Model for a single entry in the DNPM DIP MTB Patient Record ngsReports array",
"min": 0,
"max": "*",
"base": {
"path": "Element",
"min": 0,
"max": "*"
},
"condition": [
"ele-1"
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
}
],
"isModifier": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.id",
"path": "dnpm-lm-ngs-report.id",
"representation": [
"xmlAttr"
],
"short": "Unique id for inter-element referencing",
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.extension",
"path": "dnpm-lm-ngs-report.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.dnpmId",
"path": "dnpm-lm-ngs-report.dnpmId",
"short": "NGS Report UUID (DNPM internal ID)",
"definition": "NGS Report UUID (DNPM internal ID)",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.dnpmId",
"min": 1,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.patient",
"path": "dnpm-lm-ngs-report.patient",
"short": "Patient reference",
"definition": "Patient reference",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.patient",
"min": 1,
"max": "1"
},
"type": [
{
"code": "BackboneElement"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
}
]
},
{
"id": "dnpm-lm-ngs-report.patient.id",
"path": "dnpm-lm-ngs-report.patient.id",
"representation": [
"xmlAttr"
],
"short": "Patient ID",
"definition": "Patient ID",
"min": 1,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.patient.extension",
"path": "dnpm-lm-ngs-report.patient.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.patient.modifierExtension",
"path": "dnpm-lm-ngs-report.patient.modifierExtension",
"short": "Extensions that cannot be ignored even if unrecognized",
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"alias": [
"extensions",
"user content",
"modifiers"
],
"min": 0,
"max": "*",
"base": {
"path": "BackboneElement.modifierExtension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": true,
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "dnpm-lm-ngs-report.patient.type",
"path": "dnpm-lm-ngs-report.patient.type",
"short": "Reference type (Patient)",
"definition": "Reference type (Patient)",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.patient.type",
"min": 1,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.specimen",
"path": "dnpm-lm-ngs-report.specimen",
"short": "Tumor specimen reference",
"definition": "Tumor specimen reference",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.specimen",
"min": 1,
"max": "1"
},
"type": [
{
"code": "BackboneElement"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
}
]
},
{
"id": "dnpm-lm-ngs-report.specimen.id",
"path": "dnpm-lm-ngs-report.specimen.id",
"representation": [
"xmlAttr"
],
"short": "Specimen ID",
"definition": "Specimen ID",
"min": 1,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.specimen.extension",
"path": "dnpm-lm-ngs-report.specimen.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.specimen.modifierExtension",
"path": "dnpm-lm-ngs-report.specimen.modifierExtension",
"short": "Extensions that cannot be ignored even if unrecognized",
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"alias": [
"extensions",
"user content",
"modifiers"
],
"min": 0,
"max": "*",
"base": {
"path": "BackboneElement.modifierExtension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": true,
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "dnpm-lm-ngs-report.specimen.type",
"path": "dnpm-lm-ngs-report.specimen.type",
"short": "Reference type (TumorSpecimen)",
"definition": "Reference type (TumorSpecimen)",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.specimen.type",
"min": 1,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.issuedOn",
"path": "dnpm-lm-ngs-report.issuedOn",
"short": "Report issue date (YYYY-MM-DD)",
"definition": "Report issue date (YYYY-MM-DD)",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.issuedOn",
"min": 1,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.type",
"path": "dnpm-lm-ngs-report.type",
"short": "NGS analysis type (e.g. exome, panel)",
"definition": "NGS analysis type (e.g. exome, panel)",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.type",
"min": 1,
"max": "1"
},
"type": [
{
"code": "BackboneElement"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
}
]
},
{
"id": "dnpm-lm-ngs-report.type.id",
"path": "dnpm-lm-ngs-report.type.id",
"representation": [
"xmlAttr"
],
"short": "Unique id for inter-element referencing",
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.type.extension",
"path": "dnpm-lm-ngs-report.type.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.type.modifierExtension",
"path": "dnpm-lm-ngs-report.type.modifierExtension",
"short": "Extensions that cannot be ignored even if unrecognized",
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"alias": [
"extensions",
"user content",
"modifiers"
],
"min": 0,
"max": "*",
"base": {
"path": "BackboneElement.modifierExtension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": true,
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "dnpm-lm-ngs-report.type.code",
"path": "dnpm-lm-ngs-report.type.code",
"short": "Type code",
"definition": "Type code",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.type.code",
"min": 1,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.type.display",
"path": "dnpm-lm-ngs-report.type.display",
"short": "Type display",
"definition": "Type display",
"min": 0,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.type.display",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.type.system",
"path": "dnpm-lm-ngs-report.type.system",
"short": "Type system URI",
"definition": "Type system URI",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.type.system",
"min": 1,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.metadata",
"path": "dnpm-lm-ngs-report.metadata",
"short": "NGS run metadata",
"definition": "NGS run metadata",
"min": 0,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.metadata",
"min": 0,
"max": "1"
},
"type": [
{
"code": "BackboneElement"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
}
]
},
{
"id": "dnpm-lm-ngs-report.metadata.id",
"path": "dnpm-lm-ngs-report.metadata.id",
"representation": [
"xmlAttr"
],
"short": "Unique id for inter-element referencing",
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.metadata.extension",
"path": "dnpm-lm-ngs-report.metadata.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.metadata.modifierExtension",
"path": "dnpm-lm-ngs-report.metadata.modifierExtension",
"short": "Extensions that cannot be ignored even if unrecognized",
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"alias": [
"extensions",
"user content",
"modifiers"
],
"min": 0,
"max": "*",
"base": {
"path": "BackboneElement.modifierExtension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": true,
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "dnpm-lm-ngs-report.metadata.referenceGenome",
"path": "dnpm-lm-ngs-report.metadata.referenceGenome",
"short": "Reference genome used",
"definition": "Reference genome used",
"min": 0,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.metadata.referenceGenome",
"min": 0,
"max": "1"
},
"type": [
{
"code": "BackboneElement"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
}
]
},
{
"id": "dnpm-lm-ngs-report.metadata.referenceGenome.id",
"path": "dnpm-lm-ngs-report.metadata.referenceGenome.id",
"representation": [
"xmlAttr"
],
"short": "Unique id for inter-element referencing",
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.metadata.referenceGenome.extension",
"path": "dnpm-lm-ngs-report.metadata.referenceGenome.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.metadata.referenceGenome.modifierExtension",
"path": "dnpm-lm-ngs-report.metadata.referenceGenome.modifierExtension",
"short": "Extensions that cannot be ignored even if unrecognized",
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"alias": [
"extensions",
"user content",
"modifiers"
],
"min": 0,
"max": "*",
"base": {
"path": "BackboneElement.modifierExtension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": true,
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "dnpm-lm-ngs-report.metadata.referenceGenome.code",
"path": "dnpm-lm-ngs-report.metadata.referenceGenome.code",
"short": "Genome build code (e.g. GRCh38)",
"definition": "Genome build code (e.g. GRCh38)",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.metadata.referenceGenome.code",
"min": 1,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.metadata.referenceGenome.display",
"path": "dnpm-lm-ngs-report.metadata.referenceGenome.display",
"short": "Genome build display",
"definition": "Genome build display",
"min": 0,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.metadata.referenceGenome.display",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.metadata.referenceGenome.system",
"path": "dnpm-lm-ngs-report.metadata.referenceGenome.system",
"short": "Genome build system URI",
"definition": "Genome build system URI",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.metadata.referenceGenome.system",
"min": 1,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.metadata.sequencer",
"path": "dnpm-lm-ngs-report.metadata.sequencer",
"short": "Sequencer instrument",
"definition": "Sequencer instrument",
"min": 0,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.metadata.sequencer",
"min": 0,
"max": "1"
},
"type": [
{
"code": "BackboneElement"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
}
]
},
{
"id": "dnpm-lm-ngs-report.metadata.sequencer.id",
"path": "dnpm-lm-ngs-report.metadata.sequencer.id",
"representation": [
"xmlAttr"
],
"short": "Unique id for inter-element referencing",
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.metadata.sequencer.extension",
"path": "dnpm-lm-ngs-report.metadata.sequencer.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.metadata.sequencer.modifierExtension",
"path": "dnpm-lm-ngs-report.metadata.sequencer.modifierExtension",
"short": "Extensions that cannot be ignored even if unrecognized",
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"alias": [
"extensions",
"user content",
"modifiers"
],
"min": 0,
"max": "*",
"base": {
"path": "BackboneElement.modifierExtension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": true,
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "dnpm-lm-ngs-report.metadata.sequencer.code",
"path": "dnpm-lm-ngs-report.metadata.sequencer.code",
"short": "Sequencer code",
"definition": "Sequencer code",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.metadata.sequencer.code",
"min": 1,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.metadata.sequencer.display",
"path": "dnpm-lm-ngs-report.metadata.sequencer.display",
"short": "Sequencer display",
"definition": "Sequencer display",
"min": 0,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.metadata.sequencer.display",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.metadata.sequencer.system",
"path": "dnpm-lm-ngs-report.metadata.sequencer.system",
"short": "Sequencer system URI",
"definition": "Sequencer system URI",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.metadata.sequencer.system",
"min": 1,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.metadata.kitManufacturer",
"path": "dnpm-lm-ngs-report.metadata.kitManufacturer",
"short": "Kit manufacturer name",
"definition": "Kit manufacturer name",
"min": 0,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.metadata.kitManufacturer",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.metadata.kitType",
"path": "dnpm-lm-ngs-report.metadata.kitType",
"short": "Kit type name",
"definition": "Kit type name",
"min": 0,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.metadata.kitType",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.metadata.pipeline",
"path": "dnpm-lm-ngs-report.metadata.pipeline",
"short": "Bioinformatics pipeline identifier",
"definition": "Bioinformatics pipeline identifier",
"min": 0,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.metadata.pipeline",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.metadata.tumorCellContent",
"path": "dnpm-lm-ngs-report.metadata.tumorCellContent",
"short": "Tumor cell content metadata estimate",
"definition": "Tumor cell content metadata estimate",
"min": 0,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.metadata.tumorCellContent",
"min": 0,
"max": "1"
},
"type": [
{
"code": "BackboneElement"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
}
]
},
{
"id": "dnpm-lm-ngs-report.metadata.tumorCellContent.id",
"path": "dnpm-lm-ngs-report.metadata.tumorCellContent.id",
"representation": [
"xmlAttr"
],
"short": "Unique id for inter-element referencing",
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
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"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.metadata.tumorCellContent.extension",
"path": "dnpm-lm-ngs-report.metadata.tumorCellContent.extension",
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"discriminator": [
{
"type": "value",
"path": "url"
}
],
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"rules": "open"
},
"short": "Additional content defined by implementations",
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"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
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{
"identity": "rim",
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}
]
},
{
"id": "dnpm-lm-ngs-report.metadata.tumorCellContent.modifierExtension",
"path": "dnpm-lm-ngs-report.metadata.tumorCellContent.modifierExtension",
"short": "Extensions that cannot be ignored even if unrecognized",
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"alias": [
"extensions",
"user content",
"modifiers"
],
"min": 0,
"max": "*",
"base": {
"path": "BackboneElement.modifierExtension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
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},
{
"key": "ext-1",
"severity": "error",
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"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": true,
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"mapping": [
{
"identity": "rim",
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}
]
},
{
"id": "dnpm-lm-ngs-report.metadata.tumorCellContent.method",
"path": "dnpm-lm-ngs-report.metadata.tumorCellContent.method",
"short": "Estimation method",
"definition": "Estimation method",
"min": 0,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.metadata.tumorCellContent.method",
"min": 0,
"max": "1"
},
"type": [
{
"code": "BackboneElement"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
}
]
},
{
"id": "dnpm-lm-ngs-report.metadata.tumorCellContent.method.id",
"path": "dnpm-lm-ngs-report.metadata.tumorCellContent.method.id",
"representation": [
"xmlAttr"
],
"short": "Unique id for inter-element referencing",
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
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"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.metadata.tumorCellContent.method.extension",
"path": "dnpm-lm-ngs-report.metadata.tumorCellContent.method.extension",
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"discriminator": [
{
"type": "value",
"path": "url"
}
],
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"rules": "open"
},
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"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
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"xpath": "@value|f:*|h:div",
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},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": false,
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"mapping": [
{
"identity": "rim",
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}
]
},
{
"id": "dnpm-lm-ngs-report.metadata.tumorCellContent.method.modifierExtension",
"path": "dnpm-lm-ngs-report.metadata.tumorCellContent.method.modifierExtension",
"short": "Extensions that cannot be ignored even if unrecognized",
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"alias": [
"extensions",
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"modifiers"
],
"min": 0,
"max": "*",
"base": {
"path": "BackboneElement.modifierExtension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
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},
{
"key": "ext-1",
"severity": "error",
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"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
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}
],
"isModifier": true,
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"isSummary": true,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "dnpm-lm-ngs-report.metadata.tumorCellContent.method.code",
"path": "dnpm-lm-ngs-report.metadata.tumorCellContent.method.code",
"short": "Method code",
"definition": "Method code",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.metadata.tumorCellContent.method.code",
"min": 1,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.metadata.tumorCellContent.method.display",
"path": "dnpm-lm-ngs-report.metadata.tumorCellContent.method.display",
"short": "Method display",
"definition": "Method display",
"min": 0,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.metadata.tumorCellContent.method.display",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.metadata.tumorCellContent.method.system",
"path": "dnpm-lm-ngs-report.metadata.tumorCellContent.method.system",
"short": "Method system URI",
"definition": "Method system URI",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.metadata.tumorCellContent.method.system",
"min": 1,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.metadata.tumorCellContent.value",
"path": "dnpm-lm-ngs-report.metadata.tumorCellContent.value",
"short": "Tumor cell content fraction (0.0 – 1.0)",
"definition": "Tumor cell content fraction (0.0 – 1.0)",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.metadata.tumorCellContent.value",
"min": 1,
"max": "1"
},
"type": [
{
"code": "decimal"
}
]
},
{
"id": "dnpm-lm-ngs-report.results",
"path": "dnpm-lm-ngs-report.results",
"short": "NGS analysis results",
"definition": "NGS analysis results",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results",
"min": 1,
"max": "1"
},
"type": [
{
"code": "BackboneElement"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.id",
"path": "dnpm-lm-ngs-report.results.id",
"representation": [
"xmlAttr"
],
"short": "Unique id for inter-element referencing",
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
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"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.extension",
"path": "dnpm-lm-ngs-report.results.extension",
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"discriminator": [
{
"type": "value",
"path": "url"
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],
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},
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"alias": [
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"path": "Element.extension",
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"max": "*"
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"type": [
{
"code": "Extension"
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],
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{
"key": "ele-1",
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},
{
"key": "ext-1",
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{
"identity": "rim",
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},
{
"id": "dnpm-lm-ngs-report.results.modifierExtension",
"path": "dnpm-lm-ngs-report.results.modifierExtension",
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"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
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],
"min": 0,
"max": "*",
"base": {
"path": "BackboneElement.modifierExtension",
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"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
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},
{
"key": "ext-1",
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"expression": "extension.exists() != value.exists()",
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}
],
"isModifier": true,
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true,
"mapping": [
{
"identity": "rim",
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}
]
},
{
"id": "dnpm-lm-ngs-report.results.tumorCellContent",
"path": "dnpm-lm-ngs-report.results.tumorCellContent",
"short": "Bioinformatically determined tumor cell content",
"definition": "Bioinformatically determined tumor cell content",
"min": 0,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.tumorCellContent",
"min": 0,
"max": "1"
},
"type": [
{
"code": "BackboneElement"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
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"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.tumorCellContent.id",
"path": "dnpm-lm-ngs-report.results.tumorCellContent.id",
"representation": [
"xmlAttr"
],
"short": "Result ID",
"definition": "Result ID",
"min": 1,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
],
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"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.tumorCellContent.extension",
"path": "dnpm-lm-ngs-report.results.tumorCellContent.extension",
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"discriminator": [
{
"type": "value",
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}
],
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},
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"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
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"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
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},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
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},
{
"key": "ext-1",
"severity": "error",
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"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
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}
],
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"mapping": [
{
"identity": "rim",
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}
]
},
{
"id": "dnpm-lm-ngs-report.results.tumorCellContent.modifierExtension",
"path": "dnpm-lm-ngs-report.results.tumorCellContent.modifierExtension",
"short": "Extensions that cannot be ignored even if unrecognized",
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"alias": [
"extensions",
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],
"min": 0,
"max": "*",
"base": {
"path": "BackboneElement.modifierExtension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
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},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": true,
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.tumorCellContent.patient",
"path": "dnpm-lm-ngs-report.results.tumorCellContent.patient",
"short": "Patient reference",
"definition": "Patient reference",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.tumorCellContent.patient",
"min": 1,
"max": "1"
},
"type": [
{
"code": "BackboneElement"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.tumorCellContent.patient.id",
"path": "dnpm-lm-ngs-report.results.tumorCellContent.patient.id",
"representation": [
"xmlAttr"
],
"short": "Patient ID",
"definition": "Patient ID",
"min": 1,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.tumorCellContent.patient.extension",
"path": "dnpm-lm-ngs-report.results.tumorCellContent.patient.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.tumorCellContent.patient.modifierExtension",
"path": "dnpm-lm-ngs-report.results.tumorCellContent.patient.modifierExtension",
"short": "Extensions that cannot be ignored even if unrecognized",
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"alias": [
"extensions",
"user content",
"modifiers"
],
"min": 0,
"max": "*",
"base": {
"path": "BackboneElement.modifierExtension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": true,
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.tumorCellContent.patient.type",
"path": "dnpm-lm-ngs-report.results.tumorCellContent.patient.type",
"short": "Reference type",
"definition": "Reference type",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.tumorCellContent.patient.type",
"min": 1,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.tumorCellContent.specimen",
"path": "dnpm-lm-ngs-report.results.tumorCellContent.specimen",
"short": "Specimen reference",
"definition": "Specimen reference",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.tumorCellContent.specimen",
"min": 1,
"max": "1"
},
"type": [
{
"code": "BackboneElement"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.tumorCellContent.specimen.id",
"path": "dnpm-lm-ngs-report.results.tumorCellContent.specimen.id",
"representation": [
"xmlAttr"
],
"short": "Specimen ID",
"definition": "Specimen ID",
"min": 1,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.tumorCellContent.specimen.extension",
"path": "dnpm-lm-ngs-report.results.tumorCellContent.specimen.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.tumorCellContent.specimen.modifierExtension",
"path": "dnpm-lm-ngs-report.results.tumorCellContent.specimen.modifierExtension",
"short": "Extensions that cannot be ignored even if unrecognized",
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"alias": [
"extensions",
"user content",
"modifiers"
],
"min": 0,
"max": "*",
"base": {
"path": "BackboneElement.modifierExtension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": true,
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.tumorCellContent.specimen.type",
"path": "dnpm-lm-ngs-report.results.tumorCellContent.specimen.type",
"short": "Reference type",
"definition": "Reference type",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.tumorCellContent.specimen.type",
"min": 1,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.tumorCellContent.method",
"path": "dnpm-lm-ngs-report.results.tumorCellContent.method",
"short": "Determination method",
"definition": "Determination method",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.tumorCellContent.method",
"min": 1,
"max": "1"
},
"type": [
{
"code": "BackboneElement"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.tumorCellContent.method.id",
"path": "dnpm-lm-ngs-report.results.tumorCellContent.method.id",
"representation": [
"xmlAttr"
],
"short": "Unique id for inter-element referencing",
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.tumorCellContent.method.extension",
"path": "dnpm-lm-ngs-report.results.tumorCellContent.method.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.tumorCellContent.method.modifierExtension",
"path": "dnpm-lm-ngs-report.results.tumorCellContent.method.modifierExtension",
"short": "Extensions that cannot be ignored even if unrecognized",
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"alias": [
"extensions",
"user content",
"modifiers"
],
"min": 0,
"max": "*",
"base": {
"path": "BackboneElement.modifierExtension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": true,
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.tumorCellContent.method.code",
"path": "dnpm-lm-ngs-report.results.tumorCellContent.method.code",
"short": "Method code",
"definition": "Method code",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.tumorCellContent.method.code",
"min": 1,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.tumorCellContent.method.display",
"path": "dnpm-lm-ngs-report.results.tumorCellContent.method.display",
"short": "Method display",
"definition": "Method display",
"min": 0,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.tumorCellContent.method.display",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.tumorCellContent.method.system",
"path": "dnpm-lm-ngs-report.results.tumorCellContent.method.system",
"short": "Method system URI",
"definition": "Method system URI",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.tumorCellContent.method.system",
"min": 1,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.tumorCellContent.value",
"path": "dnpm-lm-ngs-report.results.tumorCellContent.value",
"short": "Tumor cell content fraction (0.0 – 1.0)",
"definition": "Tumor cell content fraction (0.0 – 1.0)",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.tumorCellContent.value",
"min": 1,
"max": "1"
},
"type": [
{
"code": "decimal"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.tmb",
"path": "dnpm-lm-ngs-report.results.tmb",
"short": "Tumor Mutational Burden",
"definition": "Tumor Mutational Burden",
"min": 0,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.tmb",
"min": 0,
"max": "1"
},
"type": [
{
"code": "BackboneElement"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.tmb.id",
"path": "dnpm-lm-ngs-report.results.tmb.id",
"representation": [
"xmlAttr"
],
"short": "TMB result ID",
"definition": "TMB result ID",
"min": 1,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.tmb.extension",
"path": "dnpm-lm-ngs-report.results.tmb.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.tmb.modifierExtension",
"path": "dnpm-lm-ngs-report.results.tmb.modifierExtension",
"short": "Extensions that cannot be ignored even if unrecognized",
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"alias": [
"extensions",
"user content",
"modifiers"
],
"min": 0,
"max": "*",
"base": {
"path": "BackboneElement.modifierExtension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": true,
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.tmb.patient",
"path": "dnpm-lm-ngs-report.results.tmb.patient",
"short": "Patient reference",
"definition": "Patient reference",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.tmb.patient",
"min": 1,
"max": "1"
},
"type": [
{
"code": "BackboneElement"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.tmb.patient.id",
"path": "dnpm-lm-ngs-report.results.tmb.patient.id",
"representation": [
"xmlAttr"
],
"short": "Patient ID",
"definition": "Patient ID",
"min": 1,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.tmb.patient.extension",
"path": "dnpm-lm-ngs-report.results.tmb.patient.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.tmb.patient.modifierExtension",
"path": "dnpm-lm-ngs-report.results.tmb.patient.modifierExtension",
"short": "Extensions that cannot be ignored even if unrecognized",
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"alias": [
"extensions",
"user content",
"modifiers"
],
"min": 0,
"max": "*",
"base": {
"path": "BackboneElement.modifierExtension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": true,
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.tmb.patient.type",
"path": "dnpm-lm-ngs-report.results.tmb.patient.type",
"short": "Reference type",
"definition": "Reference type",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.tmb.patient.type",
"min": 1,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.tmb.specimen",
"path": "dnpm-lm-ngs-report.results.tmb.specimen",
"short": "Specimen reference",
"definition": "Specimen reference",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.tmb.specimen",
"min": 1,
"max": "1"
},
"type": [
{
"code": "BackboneElement"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.tmb.specimen.id",
"path": "dnpm-lm-ngs-report.results.tmb.specimen.id",
"representation": [
"xmlAttr"
],
"short": "Specimen ID",
"definition": "Specimen ID",
"min": 1,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.tmb.specimen.extension",
"path": "dnpm-lm-ngs-report.results.tmb.specimen.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.tmb.specimen.modifierExtension",
"path": "dnpm-lm-ngs-report.results.tmb.specimen.modifierExtension",
"short": "Extensions that cannot be ignored even if unrecognized",
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"alias": [
"extensions",
"user content",
"modifiers"
],
"min": 0,
"max": "*",
"base": {
"path": "BackboneElement.modifierExtension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": true,
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.tmb.specimen.type",
"path": "dnpm-lm-ngs-report.results.tmb.specimen.type",
"short": "Reference type",
"definition": "Reference type",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.tmb.specimen.type",
"min": 1,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.tmb.value",
"path": "dnpm-lm-ngs-report.results.tmb.value",
"short": "TMB quantity",
"definition": "TMB quantity",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.tmb.value",
"min": 1,
"max": "1"
},
"type": [
{
"code": "BackboneElement"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.tmb.value.id",
"path": "dnpm-lm-ngs-report.results.tmb.value.id",
"representation": [
"xmlAttr"
],
"short": "Unique id for inter-element referencing",
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.tmb.value.extension",
"path": "dnpm-lm-ngs-report.results.tmb.value.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.tmb.value.modifierExtension",
"path": "dnpm-lm-ngs-report.results.tmb.value.modifierExtension",
"short": "Extensions that cannot be ignored even if unrecognized",
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"alias": [
"extensions",
"user content",
"modifiers"
],
"min": 0,
"max": "*",
"base": {
"path": "BackboneElement.modifierExtension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": true,
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.tmb.value.value",
"path": "dnpm-lm-ngs-report.results.tmb.value.value",
"short": "Numeric TMB value",
"definition": "Numeric TMB value",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.tmb.value.value",
"min": 1,
"max": "1"
},
"type": [
{
"code": "decimal"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.tmb.value.unit",
"path": "dnpm-lm-ngs-report.results.tmb.value.unit",
"short": "Unit (e.g. Mutations per megabase)",
"definition": "Unit (e.g. Mutations per megabase)",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.tmb.value.unit",
"min": 1,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.tmb.interpretation",
"path": "dnpm-lm-ngs-report.results.tmb.interpretation",
"short": "TMB interpretation",
"definition": "TMB interpretation",
"min": 0,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.tmb.interpretation",
"min": 0,
"max": "1"
},
"type": [
{
"code": "BackboneElement"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.tmb.interpretation.id",
"path": "dnpm-lm-ngs-report.results.tmb.interpretation.id",
"representation": [
"xmlAttr"
],
"short": "Unique id for inter-element referencing",
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.tmb.interpretation.extension",
"path": "dnpm-lm-ngs-report.results.tmb.interpretation.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.tmb.interpretation.modifierExtension",
"path": "dnpm-lm-ngs-report.results.tmb.interpretation.modifierExtension",
"short": "Extensions that cannot be ignored even if unrecognized",
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"alias": [
"extensions",
"user content",
"modifiers"
],
"min": 0,
"max": "*",
"base": {
"path": "BackboneElement.modifierExtension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": true,
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.tmb.interpretation.code",
"path": "dnpm-lm-ngs-report.results.tmb.interpretation.code",
"short": "Interpretation code (e.g. high)",
"definition": "Interpretation code (e.g. high)",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.tmb.interpretation.code",
"min": 1,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.tmb.interpretation.display",
"path": "dnpm-lm-ngs-report.results.tmb.interpretation.display",
"short": "Interpretation display",
"definition": "Interpretation display",
"min": 0,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.tmb.interpretation.display",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.tmb.interpretation.system",
"path": "dnpm-lm-ngs-report.results.tmb.interpretation.system",
"short": "Interpretation system URI",
"definition": "Interpretation system URI",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.tmb.interpretation.system",
"min": 1,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.brcaness",
"path": "dnpm-lm-ngs-report.results.brcaness",
"short": "BRCAness score",
"definition": "BRCAness score",
"min": 0,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.brcaness",
"min": 0,
"max": "1"
},
"type": [
{
"code": "BackboneElement"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.brcaness.id",
"path": "dnpm-lm-ngs-report.results.brcaness.id",
"representation": [
"xmlAttr"
],
"short": "BRCAness result ID",
"definition": "BRCAness result ID",
"min": 1,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.brcaness.extension",
"path": "dnpm-lm-ngs-report.results.brcaness.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.brcaness.modifierExtension",
"path": "dnpm-lm-ngs-report.results.brcaness.modifierExtension",
"short": "Extensions that cannot be ignored even if unrecognized",
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"alias": [
"extensions",
"user content",
"modifiers"
],
"min": 0,
"max": "*",
"base": {
"path": "BackboneElement.modifierExtension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": true,
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.brcaness.patient",
"path": "dnpm-lm-ngs-report.results.brcaness.patient",
"short": "Patient reference",
"definition": "Patient reference",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.brcaness.patient",
"min": 1,
"max": "1"
},
"type": [
{
"code": "BackboneElement"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.brcaness.patient.id",
"path": "dnpm-lm-ngs-report.results.brcaness.patient.id",
"representation": [
"xmlAttr"
],
"short": "Patient ID",
"definition": "Patient ID",
"min": 1,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.brcaness.patient.extension",
"path": "dnpm-lm-ngs-report.results.brcaness.patient.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.brcaness.patient.modifierExtension",
"path": "dnpm-lm-ngs-report.results.brcaness.patient.modifierExtension",
"short": "Extensions that cannot be ignored even if unrecognized",
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"alias": [
"extensions",
"user content",
"modifiers"
],
"min": 0,
"max": "*",
"base": {
"path": "BackboneElement.modifierExtension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": true,
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.brcaness.patient.type",
"path": "dnpm-lm-ngs-report.results.brcaness.patient.type",
"short": "Reference type",
"definition": "Reference type",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.brcaness.patient.type",
"min": 1,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.brcaness.specimen",
"path": "dnpm-lm-ngs-report.results.brcaness.specimen",
"short": "Specimen reference",
"definition": "Specimen reference",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.brcaness.specimen",
"min": 1,
"max": "1"
},
"type": [
{
"code": "BackboneElement"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.brcaness.specimen.id",
"path": "dnpm-lm-ngs-report.results.brcaness.specimen.id",
"representation": [
"xmlAttr"
],
"short": "Specimen ID",
"definition": "Specimen ID",
"min": 1,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.brcaness.specimen.extension",
"path": "dnpm-lm-ngs-report.results.brcaness.specimen.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.brcaness.specimen.modifierExtension",
"path": "dnpm-lm-ngs-report.results.brcaness.specimen.modifierExtension",
"short": "Extensions that cannot be ignored even if unrecognized",
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"alias": [
"extensions",
"user content",
"modifiers"
],
"min": 0,
"max": "*",
"base": {
"path": "BackboneElement.modifierExtension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": true,
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.brcaness.specimen.type",
"path": "dnpm-lm-ngs-report.results.brcaness.specimen.type",
"short": "Reference type",
"definition": "Reference type",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.brcaness.specimen.type",
"min": 1,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.brcaness.value",
"path": "dnpm-lm-ngs-report.results.brcaness.value",
"short": "BRCAness score (0.0 – 1.0)",
"definition": "BRCAness score (0.0 – 1.0)",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.brcaness.value",
"min": 1,
"max": "1"
},
"type": [
{
"code": "decimal"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.brcaness.confidenceRange",
"path": "dnpm-lm-ngs-report.results.brcaness.confidenceRange",
"short": "Confidence range",
"definition": "Confidence range",
"min": 0,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.brcaness.confidenceRange",
"min": 0,
"max": "1"
},
"type": [
{
"code": "BackboneElement"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
}
]
},
{
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{
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{
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{
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},
{
"id": "dnpm-lm-ngs-report.results.brcaness.confidenceRange.min",
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},
{
"id": "dnpm-lm-ngs-report.results.brcaness.confidenceRange.max",
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"path": "dnpm-lm-ngs-report.results.brcaness.confidenceRange.max",
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},
{
"id": "dnpm-lm-ngs-report.results.hrdScore",
"path": "dnpm-lm-ngs-report.results.hrdScore",
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},
{
"id": "dnpm-lm-ngs-report.results.hrdScore.patient",
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{
"id": "dnpm-lm-ngs-report.results.hrdScore.specimen",
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"short": "Specimen ID",
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},
{
"id": "dnpm-lm-ngs-report.results.hrdScore.specimen.type",
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"short": "Reference type",
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"base": {
"path": "dnpm-lm-ngs-report.results.hrdScore.specimen.type",
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"type": [
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},
{
"id": "dnpm-lm-ngs-report.results.hrdScore.value",
"path": "dnpm-lm-ngs-report.results.hrdScore.value",
"short": "HRD composite score",
"definition": "HRD composite score",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.hrdScore.value",
"min": 1,
"max": "1"
},
"type": [
{
"code": "decimal"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.hrdScore.components",
"path": "dnpm-lm-ngs-report.results.hrdScore.components",
"short": "HRD component scores",
"definition": "HRD component scores",
"min": 0,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.hrdScore.components",
"min": 0,
"max": "1"
},
"type": [
{
"code": "BackboneElement"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
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"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.hrdScore.components.id",
"path": "dnpm-lm-ngs-report.results.hrdScore.components.id",
"representation": [
"xmlAttr"
],
"short": "Unique id for inter-element referencing",
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"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.hrdScore.components.extension",
"path": "dnpm-lm-ngs-report.results.hrdScore.components.extension",
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"discriminator": [
{
"type": "value",
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],
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"rules": "open"
},
"short": "Additional content defined by implementations",
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"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
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"extensions",
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"min": 0,
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"base": {
"path": "Element.extension",
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"max": "*"
},
"type": [
{
"code": "Extension"
}
],
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{
"key": "ele-1",
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},
{
"key": "ext-1",
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"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
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},
{
"id": "dnpm-lm-ngs-report.results.hrdScore.components.modifierExtension",
"path": "dnpm-lm-ngs-report.results.hrdScore.components.modifierExtension",
"short": "Extensions that cannot be ignored even if unrecognized",
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
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"extensions",
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"modifiers"
],
"min": 0,
"max": "*",
"base": {
"path": "BackboneElement.modifierExtension",
"min": 0,
"max": "*"
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"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
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},
{
"key": "ext-1",
"severity": "error",
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"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
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}
],
"isModifier": true,
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"mapping": [
{
"identity": "rim",
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}
]
},
{
"id": "dnpm-lm-ngs-report.results.hrdScore.components.lst",
"path": "dnpm-lm-ngs-report.results.hrdScore.components.lst",
"short": "Large-scale state transitions (LST)",
"definition": "Large-scale state transitions (LST)",
"min": 0,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.hrdScore.components.lst",
"min": 0,
"max": "1"
},
"type": [
{
"code": "decimal"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.hrdScore.components.loh",
"path": "dnpm-lm-ngs-report.results.hrdScore.components.loh",
"short": "Loss of heterozygosity (LOH)",
"definition": "Loss of heterozygosity (LOH)",
"min": 0,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.hrdScore.components.loh",
"min": 0,
"max": "1"
},
"type": [
{
"code": "decimal"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.hrdScore.components.tai",
"path": "dnpm-lm-ngs-report.results.hrdScore.components.tai",
"short": "Telomeric allelic imbalance (TAI)",
"definition": "Telomeric allelic imbalance (TAI)",
"min": 0,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.hrdScore.components.tai",
"min": 0,
"max": "1"
},
"type": [
{
"code": "decimal"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.hrdScore.interpretation",
"path": "dnpm-lm-ngs-report.results.hrdScore.interpretation",
"short": "HRD interpretation",
"definition": "HRD interpretation",
"min": 0,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.hrdScore.interpretation",
"min": 0,
"max": "1"
},
"type": [
{
"code": "BackboneElement"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
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}
]
},
{
"id": "dnpm-lm-ngs-report.results.hrdScore.interpretation.id",
"path": "dnpm-lm-ngs-report.results.hrdScore.interpretation.id",
"representation": [
"xmlAttr"
],
"short": "Unique id for inter-element referencing",
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"min": 0,
"max": "1",
"base": {
"path": "Element.id",
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"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
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],
"code": "http://hl7.org/fhirpath/System.String"
}
],
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{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.hrdScore.interpretation.extension",
"path": "dnpm-lm-ngs-report.results.hrdScore.interpretation.extension",
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{
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],
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},
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"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
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"min": 0,
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"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
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},
{
"key": "ext-1",
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"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
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],
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{
"identity": "rim",
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{
"id": "dnpm-lm-ngs-report.results.hrdScore.interpretation.modifierExtension",
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"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
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"extensions",
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"min": 0,
"max": "*",
"base": {
"path": "BackboneElement.modifierExtension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
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},
{
"key": "ext-1",
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"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
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],
"isModifier": true,
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"mapping": [
{
"identity": "rim",
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}
]
},
{
"id": "dnpm-lm-ngs-report.results.hrdScore.interpretation.code",
"path": "dnpm-lm-ngs-report.results.hrdScore.interpretation.code",
"short": "Interpretation code (e.g. low)",
"definition": "Interpretation code (e.g. low)",
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"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.hrdScore.interpretation.code",
"min": 1,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.hrdScore.interpretation.display",
"path": "dnpm-lm-ngs-report.results.hrdScore.interpretation.display",
"short": "Interpretation display",
"definition": "Interpretation display",
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"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.hrdScore.interpretation.display",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.hrdScore.interpretation.system",
"path": "dnpm-lm-ngs-report.results.hrdScore.interpretation.system",
"short": "Interpretation system URI",
"definition": "Interpretation system URI",
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"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.hrdScore.interpretation.system",
"min": 1,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.simpleVariants",
"path": "dnpm-lm-ngs-report.results.simpleVariants",
"short": "Simple variants (SNV / small indels)",
"definition": "Simple variants (SNV / small indels)",
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"path": "dnpm-lm-ngs-report.results.simpleVariants",
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"max": "*"
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"code": "BackboneElement"
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],
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{
"key": "ele-1",
"severity": "error",
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}
]
},
{
"id": "dnpm-lm-ngs-report.results.simpleVariants.id",
"path": "dnpm-lm-ngs-report.results.simpleVariants.id",
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],
"short": "Variant ID",
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"max": "1",
"base": {
"path": "Element.id",
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},
"type": [
{
"code": "string"
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],
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{
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],
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},
{
"key": "ext-1",
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{
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"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
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"min": 0,
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],
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{
"key": "ele-1",
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},
{
"key": "ext-1",
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],
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"mapping": [
{
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}
]
},
{
"id": "dnpm-lm-ngs-report.results.simpleVariants.patient",
"path": "dnpm-lm-ngs-report.results.simpleVariants.patient",
"short": "Patient reference",
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"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.simpleVariants.patient",
"min": 1,
"max": "1"
},
"type": [
{
"code": "BackboneElement"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
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"xpath": "@value|f:*|h:div",
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}
]
},
{
"id": "dnpm-lm-ngs-report.results.simpleVariants.patient.id",
"path": "dnpm-lm-ngs-report.results.simpleVariants.patient.id",
"representation": [
"xmlAttr"
],
"short": "Patient ID",
"definition": "Patient ID",
"min": 1,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
],
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"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.simpleVariants.patient.extension",
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{
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],
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},
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"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
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"min": 0,
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"base": {
"path": "Element.extension",
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"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
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},
{
"key": "ext-1",
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"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.simpleVariants.patient.modifierExtension",
"path": "dnpm-lm-ngs-report.results.simpleVariants.patient.modifierExtension",
"short": "Extensions that cannot be ignored even if unrecognized",
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"alias": [
"extensions",
"user content",
"modifiers"
],
"min": 0,
"max": "*",
"base": {
"path": "BackboneElement.modifierExtension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": true,
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.simpleVariants.patient.type",
"path": "dnpm-lm-ngs-report.results.simpleVariants.patient.type",
"short": "Reference type",
"definition": "Reference type",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.simpleVariants.patient.type",
"min": 1,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.simpleVariants.externalIds",
"path": "dnpm-lm-ngs-report.results.simpleVariants.externalIds",
"short": "External variant identifiers (e.g. dbSNP rs-number)",
"definition": "External variant identifiers (e.g. dbSNP rs-number)",
"min": 0,
"max": "*",
"base": {
"path": "dnpm-lm-ngs-report.results.simpleVariants.externalIds",
"min": 0,
"max": "*"
},
"type": [
{
"code": "BackboneElement"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.simpleVariants.externalIds.id",
"path": "dnpm-lm-ngs-report.results.simpleVariants.externalIds.id",
"representation": [
"xmlAttr"
],
"short": "Unique id for inter-element referencing",
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.simpleVariants.externalIds.extension",
"path": "dnpm-lm-ngs-report.results.simpleVariants.externalIds.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
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"rules": "open"
},
"short": "Additional content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.simpleVariants.externalIds.modifierExtension",
"path": "dnpm-lm-ngs-report.results.simpleVariants.externalIds.modifierExtension",
"short": "Extensions that cannot be ignored even if unrecognized",
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"alias": [
"extensions",
"user content",
"modifiers"
],
"min": 0,
"max": "*",
"base": {
"path": "BackboneElement.modifierExtension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": true,
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.simpleVariants.externalIds.value",
"path": "dnpm-lm-ngs-report.results.simpleVariants.externalIds.value",
"short": "Identifier value",
"definition": "Identifier value",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.simpleVariants.externalIds.value",
"min": 1,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.simpleVariants.externalIds.system",
"path": "dnpm-lm-ngs-report.results.simpleVariants.externalIds.system",
"short": "Identifier system URI",
"definition": "Identifier system URI",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.simpleVariants.externalIds.system",
"min": 1,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.simpleVariants.chromosome",
"path": "dnpm-lm-ngs-report.results.simpleVariants.chromosome",
"short": "Chromosome (e.g. chr4)",
"definition": "Chromosome (e.g. chr4)",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.simpleVariants.chromosome",
"min": 1,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.simpleVariants.gene",
"path": "dnpm-lm-ngs-report.results.simpleVariants.gene",
"short": "Affected gene",
"definition": "Affected gene",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.simpleVariants.gene",
"min": 1,
"max": "1"
},
"type": [
{
"code": "BackboneElement"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.simpleVariants.gene.id",
"path": "dnpm-lm-ngs-report.results.simpleVariants.gene.id",
"representation": [
"xmlAttr"
],
"short": "Unique id for inter-element referencing",
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.simpleVariants.gene.extension",
"path": "dnpm-lm-ngs-report.results.simpleVariants.gene.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
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"rules": "open"
},
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"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
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],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
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},
{
"key": "ext-1",
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"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
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}
],
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{
"identity": "rim",
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}
]
},
{
"id": "dnpm-lm-ngs-report.results.simpleVariants.gene.modifierExtension",
"path": "dnpm-lm-ngs-report.results.simpleVariants.gene.modifierExtension",
"short": "Extensions that cannot be ignored even if unrecognized",
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"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"alias": [
"extensions",
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"modifiers"
],
"min": 0,
"max": "*",
"base": {
"path": "BackboneElement.modifierExtension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
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"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": true,
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.simpleVariants.gene.code",
"path": "dnpm-lm-ngs-report.results.simpleVariants.gene.code",
"short": "HGNC gene code",
"definition": "HGNC gene code",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.simpleVariants.gene.code",
"min": 1,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.simpleVariants.gene.display",
"path": "dnpm-lm-ngs-report.results.simpleVariants.gene.display",
"short": "Gene symbol",
"definition": "Gene symbol",
"min": 0,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.simpleVariants.gene.display",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.simpleVariants.gene.system",
"path": "dnpm-lm-ngs-report.results.simpleVariants.gene.system",
"short": "Gene nomenclature system URI",
"definition": "Gene nomenclature system URI",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.simpleVariants.gene.system",
"min": 1,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.simpleVariants.localization",
"path": "dnpm-lm-ngs-report.results.simpleVariants.localization",
"short": "Variant localisation in gene",
"definition": "Variant localisation in gene",
"min": 0,
"max": "*",
"base": {
"path": "dnpm-lm-ngs-report.results.simpleVariants.localization",
"min": 0,
"max": "*"
},
"type": [
{
"code": "BackboneElement"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
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"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.simpleVariants.localization.id",
"path": "dnpm-lm-ngs-report.results.simpleVariants.localization.id",
"representation": [
"xmlAttr"
],
"short": "Unique id for inter-element referencing",
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"min": 0,
"max": "1",
"base": {
"path": "Element.id",
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"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
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"mapping": [
{
"identity": "rim",
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]
},
{
"id": "dnpm-lm-ngs-report.results.simpleVariants.localization.extension",
"path": "dnpm-lm-ngs-report.results.simpleVariants.localization.extension",
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"discriminator": [
{
"type": "value",
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],
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},
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"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
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"base": {
"path": "Element.extension",
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},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
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},
{
"key": "ext-1",
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],
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},
{
"id": "dnpm-lm-ngs-report.results.simpleVariants.localization.modifierExtension",
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"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"alias": [
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"modifiers"
],
"min": 0,
"max": "*",
"base": {
"path": "BackboneElement.modifierExtension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": true,
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.simpleVariants.localization.code",
"path": "dnpm-lm-ngs-report.results.simpleVariants.localization.code",
"short": "Localisation code",
"definition": "Localisation code",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.simpleVariants.localization.code",
"min": 1,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.simpleVariants.localization.display",
"path": "dnpm-lm-ngs-report.results.simpleVariants.localization.display",
"short": "Localisation display",
"definition": "Localisation display",
"min": 0,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.simpleVariants.localization.display",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.simpleVariants.localization.system",
"path": "dnpm-lm-ngs-report.results.simpleVariants.localization.system",
"short": "Localisation system URI",
"definition": "Localisation system URI",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.simpleVariants.localization.system",
"min": 1,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.simpleVariants.transcriptId",
"path": "dnpm-lm-ngs-report.results.simpleVariants.transcriptId",
"short": "Transcript identifier",
"definition": "Transcript identifier",
"min": 0,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.simpleVariants.transcriptId",
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"max": "1"
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"code": "BackboneElement"
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"constraint": [
{
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},
{
"id": "dnpm-lm-ngs-report.results.simpleVariants.transcriptId.id",
"path": "dnpm-lm-ngs-report.results.simpleVariants.transcriptId.id",
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],
"short": "Unique id for inter-element referencing",
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"max": "1",
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"type": [
{
"extension": [
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{
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{
"key": "ext-1",
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{
"id": "dnpm-lm-ngs-report.results.simpleVariants.transcriptId.modifierExtension",
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{
"key": "ext-1",
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},
{
"id": "dnpm-lm-ngs-report.results.simpleVariants.transcriptId.value",
"path": "dnpm-lm-ngs-report.results.simpleVariants.transcriptId.value",
"short": "Transcript ID value (e.g. ENST...)",
"definition": "Transcript ID value (e.g. ENST...)",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.simpleVariants.transcriptId.value",
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},
"type": [
{
"code": "string"
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]
},
{
"id": "dnpm-lm-ngs-report.results.simpleVariants.transcriptId.system",
"path": "dnpm-lm-ngs-report.results.simpleVariants.transcriptId.system",
"short": "Transcript system URI",
"definition": "Transcript system URI",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.simpleVariants.transcriptId.system",
"min": 1,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.simpleVariants.exonId",
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"short": "Exon identifier",
"definition": "Exon identifier",
"min": 0,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.simpleVariants.exonId",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.simpleVariants.position",
"path": "dnpm-lm-ngs-report.results.simpleVariants.position",
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"max": "1",
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"path": "dnpm-lm-ngs-report.results.simpleVariants.position",
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"max": "1"
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},
{
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"path": "dnpm-lm-ngs-report.results.simpleVariants.position.id",
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"short": "Unique id for inter-element referencing",
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"max": "1",
"base": {
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"type": [
{
"extension": [
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{
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"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
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"type": [
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{
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{
"key": "ext-1",
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},
{
"id": "dnpm-lm-ngs-report.results.simpleVariants.position.start",
"path": "dnpm-lm-ngs-report.results.simpleVariants.position.start",
"short": "Start position",
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"base": {
"path": "dnpm-lm-ngs-report.results.simpleVariants.position.start",
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]
},
{
"id": "dnpm-lm-ngs-report.results.simpleVariants.position.end",
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"min": 0,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.simpleVariants.position.end",
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"type": [
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"code": "integer"
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]
},
{
"id": "dnpm-lm-ngs-report.results.simpleVariants.altAllele",
"path": "dnpm-lm-ngs-report.results.simpleVariants.altAllele",
"short": "Alternate allele",
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"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.simpleVariants.altAllele",
"min": 1,
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"code": "string"
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},
{
"id": "dnpm-lm-ngs-report.results.simpleVariants.refAllele",
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"path": "dnpm-lm-ngs-report.results.simpleVariants.refAllele",
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"code": "string"
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]
},
{
"id": "dnpm-lm-ngs-report.results.simpleVariants.dnaChange",
"path": "dnpm-lm-ngs-report.results.simpleVariants.dnaChange",
"short": "cDNA / DNA change in HGVS notation (e.g. c.570G>T)",
"definition": "cDNA / DNA change in HGVS notation (e.g. c.570G>T)",
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"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.simpleVariants.dnaChange",
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"type": [
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},
{
"id": "dnpm-lm-ngs-report.results.simpleVariants.proteinChange",
"path": "dnpm-lm-ngs-report.results.simpleVariants.proteinChange",
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"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.simpleVariants.proteinChange",
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"type": [
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"code": "string"
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]
},
{
"id": "dnpm-lm-ngs-report.results.simpleVariants.readDepth",
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"short": "Read depth at variant position",
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"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.simpleVariants.readDepth",
"min": 0,
"max": "1"
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"type": [
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"code": "integer"
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]
},
{
"id": "dnpm-lm-ngs-report.results.simpleVariants.allelicFrequency",
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"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.simpleVariants.allelicFrequency",
"min": 0,
"max": "1"
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"type": [
{
"code": "decimal"
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},
{
"id": "dnpm-lm-ngs-report.results.simpleVariants.interpretation",
"path": "dnpm-lm-ngs-report.results.simpleVariants.interpretation",
"short": "ClinVar / clinical interpretation",
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"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.simpleVariants.interpretation",
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{
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"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
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"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": true,
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.simpleVariants.interpretation.code",
"path": "dnpm-lm-ngs-report.results.simpleVariants.interpretation.code",
"short": "Interpretation code",
"definition": "Interpretation code",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.simpleVariants.interpretation.code",
"min": 1,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.simpleVariants.interpretation.display",
"path": "dnpm-lm-ngs-report.results.simpleVariants.interpretation.display",
"short": "Interpretation display",
"definition": "Interpretation display",
"min": 0,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.simpleVariants.interpretation.display",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.simpleVariants.interpretation.system",
"path": "dnpm-lm-ngs-report.results.simpleVariants.interpretation.system",
"short": "Interpretation system URI",
"definition": "Interpretation system URI",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.simpleVariants.interpretation.system",
"min": 1,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.copyNumberVariants",
"path": "dnpm-lm-ngs-report.results.copyNumberVariants",
"short": "Copy number variants (CNV)",
"definition": "Copy number variants (CNV)",
"min": 0,
"max": "*",
"base": {
"path": "dnpm-lm-ngs-report.results.copyNumberVariants",
"min": 0,
"max": "*"
},
"type": [
{
"code": "BackboneElement"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.id",
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.id",
"representation": [
"xmlAttr"
],
"short": "CNV ID",
"definition": "CNV ID",
"min": 1,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.extension",
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.modifierExtension",
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.modifierExtension",
"short": "Extensions that cannot be ignored even if unrecognized",
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"alias": [
"extensions",
"user content",
"modifiers"
],
"min": 0,
"max": "*",
"base": {
"path": "BackboneElement.modifierExtension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": true,
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.patient",
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.patient",
"short": "Patient reference",
"definition": "Patient reference",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.patient",
"min": 1,
"max": "1"
},
"type": [
{
"code": "BackboneElement"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.patient.id",
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.patient.id",
"representation": [
"xmlAttr"
],
"short": "Patient ID",
"definition": "Patient ID",
"min": 1,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.patient.extension",
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.patient.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.patient.modifierExtension",
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.patient.modifierExtension",
"short": "Extensions that cannot be ignored even if unrecognized",
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"alias": [
"extensions",
"user content",
"modifiers"
],
"min": 0,
"max": "*",
"base": {
"path": "BackboneElement.modifierExtension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": true,
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.patient.type",
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.patient.type",
"short": "Reference type",
"definition": "Reference type",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.patient.type",
"min": 1,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.chromosome",
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.chromosome",
"short": "Chromosome (e.g. chr7)",
"definition": "Chromosome (e.g. chr7)",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.chromosome",
"min": 1,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.localization",
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.localization",
"short": "CNV localisation",
"definition": "CNV localisation",
"min": 0,
"max": "*",
"base": {
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.localization",
"min": 0,
"max": "*"
},
"type": [
{
"code": "BackboneElement"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.localization.id",
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.localization.id",
"representation": [
"xmlAttr"
],
"short": "Unique id for inter-element referencing",
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.localization.extension",
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.localization.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.localization.modifierExtension",
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.localization.modifierExtension",
"short": "Extensions that cannot be ignored even if unrecognized",
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"alias": [
"extensions",
"user content",
"modifiers"
],
"min": 0,
"max": "*",
"base": {
"path": "BackboneElement.modifierExtension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": true,
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.localization.code",
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.localization.code",
"short": "Localisation code",
"definition": "Localisation code",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.localization.code",
"min": 1,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.localization.display",
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.localization.display",
"short": "Localisation display",
"definition": "Localisation display",
"min": 0,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.localization.display",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.localization.system",
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.localization.system",
"short": "Localisation system URI",
"definition": "Localisation system URI",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.localization.system",
"min": 1,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.startRange",
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.startRange",
"short": "Start position range",
"definition": "Start position range",
"min": 0,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.startRange",
"min": 0,
"max": "1"
},
"type": [
{
"code": "BackboneElement"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.startRange.id",
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.startRange.id",
"representation": [
"xmlAttr"
],
"short": "Unique id for inter-element referencing",
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.startRange.extension",
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.startRange.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.startRange.modifierExtension",
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.startRange.modifierExtension",
"short": "Extensions that cannot be ignored even if unrecognized",
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"alias": [
"extensions",
"user content",
"modifiers"
],
"min": 0,
"max": "*",
"base": {
"path": "BackboneElement.modifierExtension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": true,
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.startRange.start",
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.startRange.start",
"short": "Range start",
"definition": "Range start",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.startRange.start",
"min": 1,
"max": "1"
},
"type": [
{
"code": "integer"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.startRange.end",
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.startRange.end",
"short": "Range end",
"definition": "Range end",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.startRange.end",
"min": 1,
"max": "1"
},
"type": [
{
"code": "integer"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.endRange",
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.endRange",
"short": "End position range",
"definition": "End position range",
"min": 0,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.endRange",
"min": 0,
"max": "1"
},
"type": [
{
"code": "BackboneElement"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.endRange.id",
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.endRange.id",
"representation": [
"xmlAttr"
],
"short": "Unique id for inter-element referencing",
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.endRange.extension",
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.endRange.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.endRange.modifierExtension",
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.endRange.modifierExtension",
"short": "Extensions that cannot be ignored even if unrecognized",
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"alias": [
"extensions",
"user content",
"modifiers"
],
"min": 0,
"max": "*",
"base": {
"path": "BackboneElement.modifierExtension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": true,
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.endRange.start",
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.endRange.start",
"short": "Range start",
"definition": "Range start",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.endRange.start",
"min": 1,
"max": "1"
},
"type": [
{
"code": "integer"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.endRange.end",
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.endRange.end",
"short": "Range end",
"definition": "Range end",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.endRange.end",
"min": 1,
"max": "1"
},
"type": [
{
"code": "integer"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.totalCopyNumber",
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.totalCopyNumber",
"short": "Total copy number",
"definition": "Total copy number",
"min": 0,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.totalCopyNumber",
"min": 0,
"max": "1"
},
"type": [
{
"code": "integer"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.relativeCopyNumber",
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.relativeCopyNumber",
"short": "Relative copy number",
"definition": "Relative copy number",
"min": 0,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.relativeCopyNumber",
"min": 0,
"max": "1"
},
"type": [
{
"code": "decimal"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.cnA",
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.cnA",
"short": "Copy number allele A",
"definition": "Copy number allele A",
"min": 0,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.cnA",
"min": 0,
"max": "1"
},
"type": [
{
"code": "integer"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.cnB",
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.cnB",
"short": "Copy number allele B",
"definition": "Copy number allele B",
"min": 0,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.cnB",
"min": 0,
"max": "1"
},
"type": [
{
"code": "integer"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.reportedAffectedGenes",
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.reportedAffectedGenes",
"short": "Reported affected genes",
"definition": "Reported affected genes",
"min": 0,
"max": "*",
"base": {
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.reportedAffectedGenes",
"min": 0,
"max": "*"
},
"type": [
{
"code": "BackboneElement"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.reportedAffectedGenes.id",
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.reportedAffectedGenes.id",
"representation": [
"xmlAttr"
],
"short": "Unique id for inter-element referencing",
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.reportedAffectedGenes.extension",
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.reportedAffectedGenes.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.reportedAffectedGenes.modifierExtension",
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.reportedAffectedGenes.modifierExtension",
"short": "Extensions that cannot be ignored even if unrecognized",
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"alias": [
"extensions",
"user content",
"modifiers"
],
"min": 0,
"max": "*",
"base": {
"path": "BackboneElement.modifierExtension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": true,
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.reportedAffectedGenes.code",
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.reportedAffectedGenes.code",
"short": "HGNC gene code",
"definition": "HGNC gene code",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.reportedAffectedGenes.code",
"min": 1,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.reportedAffectedGenes.display",
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.reportedAffectedGenes.display",
"short": "Gene symbol",
"definition": "Gene symbol",
"min": 0,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.reportedAffectedGenes.display",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.reportedAffectedGenes.system",
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.reportedAffectedGenes.system",
"short": "Gene nomenclature system URI",
"definition": "Gene nomenclature system URI",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.reportedAffectedGenes.system",
"min": 1,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.focality",
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.focality",
"short": "CNV focality",
"definition": "CNV focality",
"min": 0,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.focality",
"min": 0,
"max": "1"
},
"type": [
{
"code": "BackboneElement"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.focality.id",
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.focality.id",
"representation": [
"xmlAttr"
],
"short": "Unique id for inter-element referencing",
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.focality.extension",
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.focality.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.focality.modifierExtension",
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.focality.modifierExtension",
"short": "Extensions that cannot be ignored even if unrecognized",
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"alias": [
"extensions",
"user content",
"modifiers"
],
"min": 0,
"max": "*",
"base": {
"path": "BackboneElement.modifierExtension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": true,
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.focality.code",
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.focality.code",
"short": "Focality code (e.g. focal)",
"definition": "Focality code (e.g. focal)",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.focality.code",
"min": 1,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.focality.display",
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.focality.display",
"short": "Focality display",
"definition": "Focality display",
"min": 0,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.focality.display",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.focality.system",
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.focality.system",
"short": "Focality system URI",
"definition": "Focality system URI",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.focality.system",
"min": 1,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.type",
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.type",
"short": "CNV type (gain / loss)",
"definition": "CNV type (gain / loss)",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.type",
"min": 1,
"max": "1"
},
"type": [
{
"code": "BackboneElement"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.type.id",
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.type.id",
"representation": [
"xmlAttr"
],
"short": "Unique id for inter-element referencing",
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.type.extension",
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.type.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.type.modifierExtension",
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.type.modifierExtension",
"short": "Extensions that cannot be ignored even if unrecognized",
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"alias": [
"extensions",
"user content",
"modifiers"
],
"min": 0,
"max": "*",
"base": {
"path": "BackboneElement.modifierExtension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": true,
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.type.code",
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.type.code",
"short": "CNV type code",
"definition": "CNV type code",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.type.code",
"min": 1,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.type.display",
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.type.display",
"short": "CNV type display",
"definition": "CNV type display",
"min": 0,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.type.display",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.copyNumberVariants.type.system",
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.type.system",
"short": "CNV type system URI",
"definition": "CNV type system URI",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.copyNumberVariants.type.system",
"min": 1,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.dnaFusions",
"path": "dnpm-lm-ngs-report.results.dnaFusions",
"short": "DNA-level gene fusions",
"definition": "DNA-level gene fusions",
"min": 0,
"max": "*",
"base": {
"path": "dnpm-lm-ngs-report.results.dnaFusions",
"min": 0,
"max": "*"
},
"type": [
{
"code": "BackboneElement"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.dnaFusions.id",
"path": "dnpm-lm-ngs-report.results.dnaFusions.id",
"representation": [
"xmlAttr"
],
"short": "DNA fusion ID",
"definition": "DNA fusion ID",
"min": 1,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.dnaFusions.extension",
"path": "dnpm-lm-ngs-report.results.dnaFusions.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.dnaFusions.modifierExtension",
"path": "dnpm-lm-ngs-report.results.dnaFusions.modifierExtension",
"short": "Extensions that cannot be ignored even if unrecognized",
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"alias": [
"extensions",
"user content",
"modifiers"
],
"min": 0,
"max": "*",
"base": {
"path": "BackboneElement.modifierExtension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": true,
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.dnaFusions.patient",
"path": "dnpm-lm-ngs-report.results.dnaFusions.patient",
"short": "Patient reference",
"definition": "Patient reference",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.dnaFusions.patient",
"min": 1,
"max": "1"
},
"type": [
{
"code": "BackboneElement"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.dnaFusions.patient.id",
"path": "dnpm-lm-ngs-report.results.dnaFusions.patient.id",
"representation": [
"xmlAttr"
],
"short": "Patient ID",
"definition": "Patient ID",
"min": 1,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.dnaFusions.patient.extension",
"path": "dnpm-lm-ngs-report.results.dnaFusions.patient.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.dnaFusions.patient.modifierExtension",
"path": "dnpm-lm-ngs-report.results.dnaFusions.patient.modifierExtension",
"short": "Extensions that cannot be ignored even if unrecognized",
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"alias": [
"extensions",
"user content",
"modifiers"
],
"min": 0,
"max": "*",
"base": {
"path": "BackboneElement.modifierExtension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": true,
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.dnaFusions.patient.type",
"path": "dnpm-lm-ngs-report.results.dnaFusions.patient.type",
"short": "Reference type",
"definition": "Reference type",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.dnaFusions.patient.type",
"min": 1,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.dnaFusions.localization",
"path": "dnpm-lm-ngs-report.results.dnaFusions.localization",
"short": "Fusion localisation",
"definition": "Fusion localisation",
"min": 0,
"max": "*",
"base": {
"path": "dnpm-lm-ngs-report.results.dnaFusions.localization",
"min": 0,
"max": "*"
},
"type": [
{
"code": "BackboneElement"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.dnaFusions.localization.id",
"path": "dnpm-lm-ngs-report.results.dnaFusions.localization.id",
"representation": [
"xmlAttr"
],
"short": "Unique id for inter-element referencing",
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.dnaFusions.localization.extension",
"path": "dnpm-lm-ngs-report.results.dnaFusions.localization.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
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"rules": "open"
},
"short": "Additional content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
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"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
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"max": "*"
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"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
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"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": false,
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"mapping": [
{
"identity": "rim",
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}
]
},
{
"id": "dnpm-lm-ngs-report.results.dnaFusions.localization.modifierExtension",
"path": "dnpm-lm-ngs-report.results.dnaFusions.localization.modifierExtension",
"short": "Extensions that cannot be ignored even if unrecognized",
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"alias": [
"extensions",
"user content",
"modifiers"
],
"min": 0,
"max": "*",
"base": {
"path": "BackboneElement.modifierExtension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": true,
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"isSummary": true,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.dnaFusions.localization.code",
"path": "dnpm-lm-ngs-report.results.dnaFusions.localization.code",
"short": "Localisation code",
"definition": "Localisation code",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.dnaFusions.localization.code",
"min": 1,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.dnaFusions.localization.display",
"path": "dnpm-lm-ngs-report.results.dnaFusions.localization.display",
"short": "Localisation display",
"definition": "Localisation display",
"min": 0,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.dnaFusions.localization.display",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.dnaFusions.localization.system",
"path": "dnpm-lm-ngs-report.results.dnaFusions.localization.system",
"short": "Localisation system URI",
"definition": "Localisation system URI",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.dnaFusions.localization.system",
"min": 1,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.dnaFusions.fusionPartner5prime",
"path": "dnpm-lm-ngs-report.results.dnaFusions.fusionPartner5prime",
"short": "5-prime fusion partner",
"definition": "5-prime fusion partner",
"min": 0,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.dnaFusions.fusionPartner5prime",
"min": 0,
"max": "1"
},
"type": [
{
"code": "BackboneElement"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
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}
]
},
{
"id": "dnpm-lm-ngs-report.results.dnaFusions.fusionPartner5prime.id",
"path": "dnpm-lm-ngs-report.results.dnaFusions.fusionPartner5prime.id",
"representation": [
"xmlAttr"
],
"short": "Unique id for inter-element referencing",
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.dnaFusions.fusionPartner5prime.extension",
"path": "dnpm-lm-ngs-report.results.dnaFusions.fusionPartner5prime.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
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"rules": "open"
},
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"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
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],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
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},
{
"key": "ext-1",
"severity": "error",
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"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
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}
],
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"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.dnaFusions.fusionPartner5prime.modifierExtension",
"path": "dnpm-lm-ngs-report.results.dnaFusions.fusionPartner5prime.modifierExtension",
"short": "Extensions that cannot be ignored even if unrecognized",
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"alias": [
"extensions",
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"modifiers"
],
"min": 0,
"max": "*",
"base": {
"path": "BackboneElement.modifierExtension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
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},
{
"key": "ext-1",
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"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
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}
],
"isModifier": true,
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"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.dnaFusions.fusionPartner5prime.gene",
"path": "dnpm-lm-ngs-report.results.dnaFusions.fusionPartner5prime.gene",
"short": "5-prime partner gene",
"definition": "5-prime partner gene",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.dnaFusions.fusionPartner5prime.gene",
"min": 1,
"max": "1"
},
"type": [
{
"code": "BackboneElement"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
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"xpath": "@value|f:*|h:div",
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}
]
},
{
"id": "dnpm-lm-ngs-report.results.dnaFusions.fusionPartner5prime.gene.id",
"path": "dnpm-lm-ngs-report.results.dnaFusions.fusionPartner5prime.gene.id",
"representation": [
"xmlAttr"
],
"short": "Unique id for inter-element referencing",
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
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},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
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}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
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{
"identity": "rim",
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}
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},
{
"id": "dnpm-lm-ngs-report.results.dnaFusions.fusionPartner5prime.gene.extension",
"path": "dnpm-lm-ngs-report.results.dnaFusions.fusionPartner5prime.gene.extension",
"slicing": {
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{
"type": "value",
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],
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},
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"alias": [
"extensions",
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"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
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"max": "*"
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"type": [
{
"code": "Extension"
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],
"constraint": [
{
"key": "ele-1",
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},
{
"key": "ext-1",
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"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
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}
],
"isModifier": false,
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"mapping": [
{
"identity": "rim",
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}
]
},
{
"id": "dnpm-lm-ngs-report.results.dnaFusions.fusionPartner5prime.gene.modifierExtension",
"path": "dnpm-lm-ngs-report.results.dnaFusions.fusionPartner5prime.gene.modifierExtension",
"short": "Extensions that cannot be ignored even if unrecognized",
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"alias": [
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],
"min": 0,
"max": "*",
"base": {
"path": "BackboneElement.modifierExtension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
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},
{
"key": "ext-1",
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"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
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}
],
"isModifier": true,
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.dnaFusions.fusionPartner5prime.gene.code",
"path": "dnpm-lm-ngs-report.results.dnaFusions.fusionPartner5prime.gene.code",
"short": "HGNC gene code",
"definition": "HGNC gene code",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.dnaFusions.fusionPartner5prime.gene.code",
"min": 1,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.dnaFusions.fusionPartner5prime.gene.display",
"path": "dnpm-lm-ngs-report.results.dnaFusions.fusionPartner5prime.gene.display",
"short": "Gene symbol",
"definition": "Gene symbol",
"min": 0,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.dnaFusions.fusionPartner5prime.gene.display",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.dnaFusions.fusionPartner5prime.gene.system",
"path": "dnpm-lm-ngs-report.results.dnaFusions.fusionPartner5prime.gene.system",
"short": "Gene nomenclature system URI",
"definition": "Gene nomenclature system URI",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.dnaFusions.fusionPartner5prime.gene.system",
"min": 1,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.dnaFusions.fusionPartner5prime.position",
"path": "dnpm-lm-ngs-report.results.dnaFusions.fusionPartner5prime.position",
"short": "Breakpoint position",
"definition": "Breakpoint position",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.dnaFusions.fusionPartner5prime.position",
"min": 1,
"max": "1"
},
"type": [
{
"code": "integer"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.dnaFusions.fusionPartner3prime",
"path": "dnpm-lm-ngs-report.results.dnaFusions.fusionPartner3prime",
"short": "3-prime fusion partner",
"definition": "3-prime fusion partner",
"min": 0,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.dnaFusions.fusionPartner3prime",
"min": 0,
"max": "1"
},
"type": [
{
"code": "BackboneElement"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.dnaFusions.fusionPartner3prime.id",
"path": "dnpm-lm-ngs-report.results.dnaFusions.fusionPartner3prime.id",
"representation": [
"xmlAttr"
],
"short": "Unique id for inter-element referencing",
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
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{
"identity": "rim",
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},
{
"id": "dnpm-lm-ngs-report.results.dnaFusions.fusionPartner3prime.extension",
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{
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{
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{
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"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
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},
{
"id": "dnpm-lm-ngs-report.results.dnaFusions.fusionPartner3prime.gene",
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"base": {
"path": "dnpm-lm-ngs-report.results.dnaFusions.fusionPartner3prime.gene",
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"type": [
{
"code": "BackboneElement"
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{
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},
{
"id": "dnpm-lm-ngs-report.results.dnaFusions.fusionPartner3prime.gene.id",
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],
"short": "Unique id for inter-element referencing",
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{
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{
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"base": {
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],
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{
"key": "ext-1",
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},
{
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"path": "dnpm-lm-ngs-report.results.dnaFusions.fusionPartner3prime.gene.code",
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"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.dnaFusions.fusionPartner3prime.gene.code",
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"type": [
{
"code": "string"
}
]
},
{
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"path": "dnpm-lm-ngs-report.results.dnaFusions.fusionPartner3prime.gene.display",
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"base": {
"path": "dnpm-lm-ngs-report.results.dnaFusions.fusionPartner3prime.gene.display",
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"type": [
{
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{
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"path": "dnpm-lm-ngs-report.results.dnaFusions.fusionPartner3prime.gene.system",
"short": "Gene nomenclature system URI",
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"path": "dnpm-lm-ngs-report.results.dnaFusions.fusionPartner3prime.gene.system",
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"type": [
{
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},
{
"id": "dnpm-lm-ngs-report.results.dnaFusions.fusionPartner3prime.position",
"path": "dnpm-lm-ngs-report.results.dnaFusions.fusionPartner3prime.position",
"short": "Breakpoint position",
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"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.dnaFusions.fusionPartner3prime.position",
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"type": [
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},
{
"id": "dnpm-lm-ngs-report.results.dnaFusions.reportedNumReads",
"path": "dnpm-lm-ngs-report.results.dnaFusions.reportedNumReads",
"short": "Number of reads supporting fusion",
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]
},
{
"id": "dnpm-lm-ngs-report.results.rnaFusions",
"path": "dnpm-lm-ngs-report.results.rnaFusions",
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},
{
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"path": "dnpm-lm-ngs-report.results.rnaFusions.id",
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],
"short": "RNA fusion ID",
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{
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},
{
"id": "dnpm-lm-ngs-report.results.rnaFusions.patient",
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},
{
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"path": "dnpm-lm-ngs-report.results.rnaFusions.patient.id",
"representation": [
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],
"short": "Patient ID",
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{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": true,
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.rnaFusions.patient.type",
"path": "dnpm-lm-ngs-report.results.rnaFusions.patient.type",
"short": "Reference type",
"definition": "Reference type",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.rnaFusions.patient.type",
"min": 1,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.rnaFusions.externalIds",
"path": "dnpm-lm-ngs-report.results.rnaFusions.externalIds",
"short": "External identifiers (e.g. COSMIC fusion ID)",
"definition": "External identifiers (e.g. COSMIC fusion ID)",
"min": 0,
"max": "*",
"base": {
"path": "dnpm-lm-ngs-report.results.rnaFusions.externalIds",
"min": 0,
"max": "*"
},
"type": [
{
"code": "BackboneElement"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.rnaFusions.externalIds.id",
"path": "dnpm-lm-ngs-report.results.rnaFusions.externalIds.id",
"representation": [
"xmlAttr"
],
"short": "Unique id for inter-element referencing",
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.rnaFusions.externalIds.extension",
"path": "dnpm-lm-ngs-report.results.rnaFusions.externalIds.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.rnaFusions.externalIds.modifierExtension",
"path": "dnpm-lm-ngs-report.results.rnaFusions.externalIds.modifierExtension",
"short": "Extensions that cannot be ignored even if unrecognized",
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"alias": [
"extensions",
"user content",
"modifiers"
],
"min": 0,
"max": "*",
"base": {
"path": "BackboneElement.modifierExtension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": true,
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.rnaFusions.externalIds.value",
"path": "dnpm-lm-ngs-report.results.rnaFusions.externalIds.value",
"short": "Identifier value",
"definition": "Identifier value",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.rnaFusions.externalIds.value",
"min": 1,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.rnaFusions.externalIds.system",
"path": "dnpm-lm-ngs-report.results.rnaFusions.externalIds.system",
"short": "Identifier system URI",
"definition": "Identifier system URI",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.rnaFusions.externalIds.system",
"min": 1,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.rnaFusions.localization",
"path": "dnpm-lm-ngs-report.results.rnaFusions.localization",
"short": "Fusion localisation",
"definition": "Fusion localisation",
"min": 0,
"max": "*",
"base": {
"path": "dnpm-lm-ngs-report.results.rnaFusions.localization",
"min": 0,
"max": "*"
},
"type": [
{
"code": "BackboneElement"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.rnaFusions.localization.id",
"path": "dnpm-lm-ngs-report.results.rnaFusions.localization.id",
"representation": [
"xmlAttr"
],
"short": "Unique id for inter-element referencing",
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.rnaFusions.localization.extension",
"path": "dnpm-lm-ngs-report.results.rnaFusions.localization.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.rnaFusions.localization.modifierExtension",
"path": "dnpm-lm-ngs-report.results.rnaFusions.localization.modifierExtension",
"short": "Extensions that cannot be ignored even if unrecognized",
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"alias": [
"extensions",
"user content",
"modifiers"
],
"min": 0,
"max": "*",
"base": {
"path": "BackboneElement.modifierExtension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": true,
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.rnaFusions.localization.code",
"path": "dnpm-lm-ngs-report.results.rnaFusions.localization.code",
"short": "Localisation code",
"definition": "Localisation code",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.rnaFusions.localization.code",
"min": 1,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.rnaFusions.localization.display",
"path": "dnpm-lm-ngs-report.results.rnaFusions.localization.display",
"short": "Localisation display",
"definition": "Localisation display",
"min": 0,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.rnaFusions.localization.display",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.rnaFusions.localization.system",
"path": "dnpm-lm-ngs-report.results.rnaFusions.localization.system",
"short": "Localisation system URI",
"definition": "Localisation system URI",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.rnaFusions.localization.system",
"min": 1,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime",
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime",
"short": "5-prime fusion partner",
"definition": "5-prime fusion partner",
"min": 0,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime",
"min": 0,
"max": "1"
},
"type": [
{
"code": "BackboneElement"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime.id",
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime.id",
"representation": [
"xmlAttr"
],
"short": "Unique id for inter-element referencing",
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime.extension",
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime.modifierExtension",
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime.modifierExtension",
"short": "Extensions that cannot be ignored even if unrecognized",
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"alias": [
"extensions",
"user content",
"modifiers"
],
"min": 0,
"max": "*",
"base": {
"path": "BackboneElement.modifierExtension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": true,
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime.gene",
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime.gene",
"short": "5-prime partner gene",
"definition": "5-prime partner gene",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime.gene",
"min": 1,
"max": "1"
},
"type": [
{
"code": "BackboneElement"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime.gene.id",
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime.gene.id",
"representation": [
"xmlAttr"
],
"short": "Unique id for inter-element referencing",
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime.gene.extension",
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime.gene.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime.gene.modifierExtension",
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime.gene.modifierExtension",
"short": "Extensions that cannot be ignored even if unrecognized",
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"alias": [
"extensions",
"user content",
"modifiers"
],
"min": 0,
"max": "*",
"base": {
"path": "BackboneElement.modifierExtension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": true,
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime.gene.code",
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime.gene.code",
"short": "HGNC gene code",
"definition": "HGNC gene code",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime.gene.code",
"min": 1,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime.gene.display",
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime.gene.display",
"short": "Gene symbol",
"definition": "Gene symbol",
"min": 0,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime.gene.display",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime.gene.system",
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime.gene.system",
"short": "Gene nomenclature system URI",
"definition": "Gene nomenclature system URI",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime.gene.system",
"min": 1,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime.transcript",
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime.transcript",
"short": "5-prime transcript",
"definition": "5-prime transcript",
"min": 0,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime.transcript",
"min": 0,
"max": "1"
},
"type": [
{
"code": "BackboneElement"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime.transcript.id",
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime.transcript.id",
"representation": [
"xmlAttr"
],
"short": "Unique id for inter-element referencing",
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime.transcript.extension",
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime.transcript.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime.transcript.modifierExtension",
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime.transcript.modifierExtension",
"short": "Extensions that cannot be ignored even if unrecognized",
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"alias": [
"extensions",
"user content",
"modifiers"
],
"min": 0,
"max": "*",
"base": {
"path": "BackboneElement.modifierExtension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": true,
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime.transcript.value",
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime.transcript.value",
"short": "Transcript ID (e.g. ENST...)",
"definition": "Transcript ID (e.g. ENST...)",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime.transcript.value",
"min": 1,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime.transcript.system",
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime.transcript.system",
"short": "Transcript system URI",
"definition": "Transcript system URI",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime.transcript.system",
"min": 1,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime.exon",
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime.exon",
"short": "Exon identifier",
"definition": "Exon identifier",
"min": 0,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime.exon",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime.position",
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime.position",
"short": "Breakpoint position",
"definition": "Breakpoint position",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime.position",
"min": 1,
"max": "1"
},
"type": [
{
"code": "integer"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime.strand",
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime.strand",
"short": "Strand (+ or -)",
"definition": "Strand (+ or -)",
"min": 0,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner5prime.strand",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime",
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime",
"short": "3-prime fusion partner",
"definition": "3-prime fusion partner",
"min": 0,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime",
"min": 0,
"max": "1"
},
"type": [
{
"code": "BackboneElement"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.id",
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.id",
"representation": [
"xmlAttr"
],
"short": "Unique id for inter-element referencing",
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.extension",
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.modifierExtension",
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.modifierExtension",
"short": "Extensions that cannot be ignored even if unrecognized",
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"alias": [
"extensions",
"user content",
"modifiers"
],
"min": 0,
"max": "*",
"base": {
"path": "BackboneElement.modifierExtension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": true,
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.gene",
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.gene",
"short": "3-prime partner gene",
"definition": "3-prime partner gene",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.gene",
"min": 1,
"max": "1"
},
"type": [
{
"code": "BackboneElement"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.gene.id",
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.gene.id",
"representation": [
"xmlAttr"
],
"short": "Unique id for inter-element referencing",
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.gene.extension",
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.gene.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.gene.modifierExtension",
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.gene.modifierExtension",
"short": "Extensions that cannot be ignored even if unrecognized",
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"alias": [
"extensions",
"user content",
"modifiers"
],
"min": 0,
"max": "*",
"base": {
"path": "BackboneElement.modifierExtension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": true,
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.gene.code",
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.gene.code",
"short": "HGNC gene code",
"definition": "HGNC gene code",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.gene.code",
"min": 1,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.gene.display",
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.gene.display",
"short": "Gene symbol",
"definition": "Gene symbol",
"min": 0,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.gene.display",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.gene.system",
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.gene.system",
"short": "Gene nomenclature system URI",
"definition": "Gene nomenclature system URI",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.gene.system",
"min": 1,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.transcript",
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.transcript",
"short": "3-prime transcript",
"definition": "3-prime transcript",
"min": 0,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.transcript",
"min": 0,
"max": "1"
},
"type": [
{
"code": "BackboneElement"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.transcript.id",
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.transcript.id",
"representation": [
"xmlAttr"
],
"short": "Unique id for inter-element referencing",
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.transcript.extension",
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.transcript.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.transcript.modifierExtension",
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.transcript.modifierExtension",
"short": "Extensions that cannot be ignored even if unrecognized",
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"alias": [
"extensions",
"user content",
"modifiers"
],
"min": 0,
"max": "*",
"base": {
"path": "BackboneElement.modifierExtension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": true,
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.transcript.value",
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.transcript.value",
"short": "Transcript ID (e.g. ENST...)",
"definition": "Transcript ID (e.g. ENST...)",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.transcript.value",
"min": 1,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.transcript.system",
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.transcript.system",
"short": "Transcript system URI",
"definition": "Transcript system URI",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.transcript.system",
"min": 1,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.exon",
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.exon",
"short": "Exon identifier",
"definition": "Exon identifier",
"min": 0,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.exon",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.position",
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.position",
"short": "Breakpoint position",
"definition": "Breakpoint position",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.position",
"min": 1,
"max": "1"
},
"type": [
{
"code": "integer"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.strand",
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.strand",
"short": "Strand (+ or -)",
"definition": "Strand (+ or -)",
"min": 0,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.rnaFusions.fusionPartner3prime.strand",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.rnaFusions.effect",
"path": "dnpm-lm-ngs-report.results.rnaFusions.effect",
"short": "RNA fusion effect",
"definition": "RNA fusion effect",
"min": 0,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.rnaFusions.effect",
"min": 0,
"max": "1"
},
"type": [
{
"code": "BackboneElement"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.rnaFusions.effect.id",
"path": "dnpm-lm-ngs-report.results.rnaFusions.effect.id",
"representation": [
"xmlAttr"
],
"short": "Unique id for inter-element referencing",
"definition": "Unique id for the element within a resource (for internal references). This may be any string value that does not contain spaces.",
"min": 0,
"max": "1",
"base": {
"path": "Element.id",
"min": 0,
"max": "1"
},
"type": [
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/structuredefinition-fhir-type",
"valueUrl": "string"
}
],
"code": "http://hl7.org/fhirpath/System.String"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.rnaFusions.effect.extension",
"path": "dnpm-lm-ngs-report.results.rnaFusions.effect.extension",
"slicing": {
"discriminator": [
{
"type": "value",
"path": "url"
}
],
"description": "Extensions are always sliced by (at least) url",
"rules": "open"
},
"short": "Additional content defined by implementations",
"definition": "May be used to represent additional information that is not part of the basic definition of the element. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension.",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"alias": [
"extensions",
"user content"
],
"min": 0,
"max": "*",
"base": {
"path": "Element.extension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": false,
"isSummary": false,
"mapping": [
{
"identity": "rim",
"map": "n/a"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.rnaFusions.effect.modifierExtension",
"path": "dnpm-lm-ngs-report.results.rnaFusions.effect.modifierExtension",
"short": "Extensions that cannot be ignored even if unrecognized",
"definition": "May be used to represent additional information that is not part of the basic definition of the element and that modifies the understanding of the element in which it is contained and/or the understanding of the containing element's descendants. Usually modifier elements provide negation or qualification. To make the use of extensions safe and manageable, there is a strict set of governance applied to the definition and use of extensions. Though any implementer can define an extension, there is a set of requirements that SHALL be met as part of the definition of the extension. Applications processing a resource are required to check for modifier extensions.\n\nModifier extensions SHALL NOT change the meaning of any elements on Resource or DomainResource (including cannot change the meaning of modifierExtension itself).",
"comment": "There can be no stigma associated with the use of extensions by any application, project, or standard - regardless of the institution or jurisdiction that uses or defines the extensions. The use of extensions is what allows the FHIR specification to retain a core level of simplicity for everyone.",
"requirements": "Modifier extensions allow for extensions that *cannot* be safely ignored to be clearly distinguished from the vast majority of extensions which can be safely ignored. This promotes interoperability by eliminating the need for implementers to prohibit the presence of extensions. For further information, see the [definition of modifier extensions](http://hl7.org/fhir/R4/extensibility.html#modifierExtension).",
"alias": [
"extensions",
"user content",
"modifiers"
],
"min": 0,
"max": "*",
"base": {
"path": "BackboneElement.modifierExtension",
"min": 0,
"max": "*"
},
"type": [
{
"code": "Extension"
}
],
"constraint": [
{
"key": "ele-1",
"severity": "error",
"human": "All FHIR elements must have a @value or children",
"expression": "hasValue() or (children().count() > id.count())",
"xpath": "@value|f:*|h:div",
"source": "http://hl7.org/fhir/StructureDefinition/Element"
},
{
"key": "ext-1",
"severity": "error",
"human": "Must have either extensions or value[x], not both",
"expression": "extension.exists() != value.exists()",
"xpath": "exists(f:extension)!=exists(f:*[starts-with(local-name(.), \"value\")])",
"source": "http://hl7.org/fhir/StructureDefinition/Extension"
}
],
"isModifier": true,
"isModifierReason": "Modifier extensions are expected to modify the meaning or interpretation of the element that contains them",
"isSummary": true,
"mapping": [
{
"identity": "rim",
"map": "N/A"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.rnaFusions.effect.code",
"path": "dnpm-lm-ngs-report.results.rnaFusions.effect.code",
"short": "Effect code (e.g. in-frame)",
"definition": "Effect code (e.g. in-frame)",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.rnaFusions.effect.code",
"min": 1,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.rnaFusions.effect.display",
"path": "dnpm-lm-ngs-report.results.rnaFusions.effect.display",
"short": "Effect display",
"definition": "Effect display",
"min": 0,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.rnaFusions.effect.display",
"min": 0,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.rnaFusions.effect.system",
"path": "dnpm-lm-ngs-report.results.rnaFusions.effect.system",
"short": "Effect system URI",
"definition": "Effect system URI",
"min": 1,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.rnaFusions.effect.system",
"min": 1,
"max": "1"
},
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.rnaFusions.reportedNumReads",
"path": "dnpm-lm-ngs-report.results.rnaFusions.reportedNumReads",
"short": "Number of reads supporting fusion",
"definition": "Number of reads supporting fusion",
"min": 0,
"max": "1",
"base": {
"path": "dnpm-lm-ngs-report.results.rnaFusions.reportedNumReads",
"min": 0,
"max": "1"
},
"type": [
{
"code": "integer"
}
]
}
]
},
"differential": {
"element": [
{
"id": "dnpm-lm-ngs-report",
"path": "dnpm-lm-ngs-report",
"short": "DNPM NGS Report",
"definition": "Logical Model for a single entry in the DNPM DIP MTB Patient Record ngsReports array"
},
{
"id": "dnpm-lm-ngs-report.dnpmId",
"path": "dnpm-lm-ngs-report.dnpmId",
"short": "NGS Report UUID (DNPM internal ID)",
"definition": "NGS Report UUID (DNPM internal ID)",
"min": 1,
"max": "1",
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.patient",
"path": "dnpm-lm-ngs-report.patient",
"short": "Patient reference",
"definition": "Patient reference",
"min": 1,
"max": "1",
"type": [
{
"code": "BackboneElement"
}
]
},
{
"id": "dnpm-lm-ngs-report.patient.id",
"path": "dnpm-lm-ngs-report.patient.id",
"short": "Patient ID",
"definition": "Patient ID",
"min": 1,
"max": "1",
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.patient.type",
"path": "dnpm-lm-ngs-report.patient.type",
"short": "Reference type (Patient)",
"definition": "Reference type (Patient)",
"min": 1,
"max": "1",
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.specimen",
"path": "dnpm-lm-ngs-report.specimen",
"short": "Tumor specimen reference",
"definition": "Tumor specimen reference",
"min": 1,
"max": "1",
"type": [
{
"code": "BackboneElement"
}
]
},
{
"id": "dnpm-lm-ngs-report.specimen.id",
"path": "dnpm-lm-ngs-report.specimen.id",
"short": "Specimen ID",
"definition": "Specimen ID",
"min": 1,
"max": "1",
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.specimen.type",
"path": "dnpm-lm-ngs-report.specimen.type",
"short": "Reference type (TumorSpecimen)",
"definition": "Reference type (TumorSpecimen)",
"min": 1,
"max": "1",
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.issuedOn",
"path": "dnpm-lm-ngs-report.issuedOn",
"short": "Report issue date (YYYY-MM-DD)",
"definition": "Report issue date (YYYY-MM-DD)",
"min": 1,
"max": "1",
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.type",
"path": "dnpm-lm-ngs-report.type",
"short": "NGS analysis type (e.g. exome, panel)",
"definition": "NGS analysis type (e.g. exome, panel)",
"min": 1,
"max": "1",
"type": [
{
"code": "BackboneElement"
}
]
},
{
"id": "dnpm-lm-ngs-report.type.code",
"path": "dnpm-lm-ngs-report.type.code",
"short": "Type code",
"definition": "Type code",
"min": 1,
"max": "1",
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.type.display",
"path": "dnpm-lm-ngs-report.type.display",
"short": "Type display",
"definition": "Type display",
"min": 0,
"max": "1",
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.type.system",
"path": "dnpm-lm-ngs-report.type.system",
"short": "Type system URI",
"definition": "Type system URI",
"min": 1,
"max": "1",
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.metadata",
"path": "dnpm-lm-ngs-report.metadata",
"short": "NGS run metadata",
"definition": "NGS run metadata",
"min": 0,
"max": "1",
"type": [
{
"code": "BackboneElement"
}
]
},
{
"id": "dnpm-lm-ngs-report.metadata.referenceGenome",
"path": "dnpm-lm-ngs-report.metadata.referenceGenome",
"short": "Reference genome used",
"definition": "Reference genome used",
"min": 0,
"max": "1",
"type": [
{
"code": "BackboneElement"
}
]
},
{
"id": "dnpm-lm-ngs-report.metadata.referenceGenome.code",
"path": "dnpm-lm-ngs-report.metadata.referenceGenome.code",
"short": "Genome build code (e.g. GRCh38)",
"definition": "Genome build code (e.g. GRCh38)",
"min": 1,
"max": "1",
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.metadata.referenceGenome.display",
"path": "dnpm-lm-ngs-report.metadata.referenceGenome.display",
"short": "Genome build display",
"definition": "Genome build display",
"min": 0,
"max": "1",
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.metadata.referenceGenome.system",
"path": "dnpm-lm-ngs-report.metadata.referenceGenome.system",
"short": "Genome build system URI",
"definition": "Genome build system URI",
"min": 1,
"max": "1",
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.metadata.sequencer",
"path": "dnpm-lm-ngs-report.metadata.sequencer",
"short": "Sequencer instrument",
"definition": "Sequencer instrument",
"min": 0,
"max": "1",
"type": [
{
"code": "BackboneElement"
}
]
},
{
"id": "dnpm-lm-ngs-report.metadata.sequencer.code",
"path": "dnpm-lm-ngs-report.metadata.sequencer.code",
"short": "Sequencer code",
"definition": "Sequencer code",
"min": 1,
"max": "1",
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.metadata.sequencer.display",
"path": "dnpm-lm-ngs-report.metadata.sequencer.display",
"short": "Sequencer display",
"definition": "Sequencer display",
"min": 0,
"max": "1",
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.metadata.sequencer.system",
"path": "dnpm-lm-ngs-report.metadata.sequencer.system",
"short": "Sequencer system URI",
"definition": "Sequencer system URI",
"min": 1,
"max": "1",
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.metadata.kitManufacturer",
"path": "dnpm-lm-ngs-report.metadata.kitManufacturer",
"short": "Kit manufacturer name",
"definition": "Kit manufacturer name",
"min": 0,
"max": "1",
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.metadata.kitType",
"path": "dnpm-lm-ngs-report.metadata.kitType",
"short": "Kit type name",
"definition": "Kit type name",
"min": 0,
"max": "1",
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.metadata.pipeline",
"path": "dnpm-lm-ngs-report.metadata.pipeline",
"short": "Bioinformatics pipeline identifier",
"definition": "Bioinformatics pipeline identifier",
"min": 0,
"max": "1",
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.metadata.tumorCellContent",
"path": "dnpm-lm-ngs-report.metadata.tumorCellContent",
"short": "Tumor cell content metadata estimate",
"definition": "Tumor cell content metadata estimate",
"min": 0,
"max": "1",
"type": [
{
"code": "BackboneElement"
}
]
},
{
"id": "dnpm-lm-ngs-report.metadata.tumorCellContent.method",
"path": "dnpm-lm-ngs-report.metadata.tumorCellContent.method",
"short": "Estimation method",
"definition": "Estimation method",
"min": 0,
"max": "1",
"type": [
{
"code": "BackboneElement"
}
]
},
{
"id": "dnpm-lm-ngs-report.metadata.tumorCellContent.method.code",
"path": "dnpm-lm-ngs-report.metadata.tumorCellContent.method.code",
"short": "Method code",
"definition": "Method code",
"min": 1,
"max": "1",
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.metadata.tumorCellContent.method.display",
"path": "dnpm-lm-ngs-report.metadata.tumorCellContent.method.display",
"short": "Method display",
"definition": "Method display",
"min": 0,
"max": "1",
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.metadata.tumorCellContent.method.system",
"path": "dnpm-lm-ngs-report.metadata.tumorCellContent.method.system",
"short": "Method system URI",
"definition": "Method system URI",
"min": 1,
"max": "1",
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.metadata.tumorCellContent.value",
"path": "dnpm-lm-ngs-report.metadata.tumorCellContent.value",
"short": "Tumor cell content fraction (0.0 – 1.0)",
"definition": "Tumor cell content fraction (0.0 – 1.0)",
"min": 1,
"max": "1",
"type": [
{
"code": "decimal"
}
]
},
{
"id": "dnpm-lm-ngs-report.results",
"path": "dnpm-lm-ngs-report.results",
"short": "NGS analysis results",
"definition": "NGS analysis results",
"min": 1,
"max": "1",
"type": [
{
"code": "BackboneElement"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.tumorCellContent",
"path": "dnpm-lm-ngs-report.results.tumorCellContent",
"short": "Bioinformatically determined tumor cell content",
"definition": "Bioinformatically determined tumor cell content",
"min": 0,
"max": "1",
"type": [
{
"code": "BackboneElement"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.tumorCellContent.id",
"path": "dnpm-lm-ngs-report.results.tumorCellContent.id",
"short": "Result ID",
"definition": "Result ID",
"min": 1,
"max": "1",
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.tumorCellContent.patient",
"path": "dnpm-lm-ngs-report.results.tumorCellContent.patient",
"short": "Patient reference",
"definition": "Patient reference",
"min": 1,
"max": "1",
"type": [
{
"code": "BackboneElement"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.tumorCellContent.patient.id",
"path": "dnpm-lm-ngs-report.results.tumorCellContent.patient.id",
"short": "Patient ID",
"definition": "Patient ID",
"min": 1,
"max": "1",
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.tumorCellContent.patient.type",
"path": "dnpm-lm-ngs-report.results.tumorCellContent.patient.type",
"short": "Reference type",
"definition": "Reference type",
"min": 1,
"max": "1",
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.tumorCellContent.specimen",
"path": "dnpm-lm-ngs-report.results.tumorCellContent.specimen",
"short": "Specimen reference",
"definition": "Specimen reference",
"min": 1,
"max": "1",
"type": [
{
"code": "BackboneElement"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.tumorCellContent.specimen.id",
"path": "dnpm-lm-ngs-report.results.tumorCellContent.specimen.id",
"short": "Specimen ID",
"definition": "Specimen ID",
"min": 1,
"max": "1",
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.tumorCellContent.specimen.type",
"path": "dnpm-lm-ngs-report.results.tumorCellContent.specimen.type",
"short": "Reference type",
"definition": "Reference type",
"min": 1,
"max": "1",
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.tumorCellContent.method",
"path": "dnpm-lm-ngs-report.results.tumorCellContent.method",
"short": "Determination method",
"definition": "Determination method",
"min": 1,
"max": "1",
"type": [
{
"code": "BackboneElement"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.tumorCellContent.method.code",
"path": "dnpm-lm-ngs-report.results.tumorCellContent.method.code",
"short": "Method code",
"definition": "Method code",
"min": 1,
"max": "1",
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.tumorCellContent.method.display",
"path": "dnpm-lm-ngs-report.results.tumorCellContent.method.display",
"short": "Method display",
"definition": "Method display",
"min": 0,
"max": "1",
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.tumorCellContent.method.system",
"path": "dnpm-lm-ngs-report.results.tumorCellContent.method.system",
"short": "Method system URI",
"definition": "Method system URI",
"min": 1,
"max": "1",
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.tumorCellContent.value",
"path": "dnpm-lm-ngs-report.results.tumorCellContent.value",
"short": "Tumor cell content fraction (0.0 – 1.0)",
"definition": "Tumor cell content fraction (0.0 – 1.0)",
"min": 1,
"max": "1",
"type": [
{
"code": "decimal"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.tmb",
"path": "dnpm-lm-ngs-report.results.tmb",
"short": "Tumor Mutational Burden",
"definition": "Tumor Mutational Burden",
"min": 0,
"max": "1",
"type": [
{
"code": "BackboneElement"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.tmb.id",
"path": "dnpm-lm-ngs-report.results.tmb.id",
"short": "TMB result ID",
"definition": "TMB result ID",
"min": 1,
"max": "1",
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.tmb.patient",
"path": "dnpm-lm-ngs-report.results.tmb.patient",
"short": "Patient reference",
"definition": "Patient reference",
"min": 1,
"max": "1",
"type": [
{
"code": "BackboneElement"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.tmb.patient.id",
"path": "dnpm-lm-ngs-report.results.tmb.patient.id",
"short": "Patient ID",
"definition": "Patient ID",
"min": 1,
"max": "1",
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.tmb.patient.type",
"path": "dnpm-lm-ngs-report.results.tmb.patient.type",
"short": "Reference type",
"definition": "Reference type",
"min": 1,
"max": "1",
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.tmb.specimen",
"path": "dnpm-lm-ngs-report.results.tmb.specimen",
"short": "Specimen reference",
"definition": "Specimen reference",
"min": 1,
"max": "1",
"type": [
{
"code": "BackboneElement"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.tmb.specimen.id",
"path": "dnpm-lm-ngs-report.results.tmb.specimen.id",
"short": "Specimen ID",
"definition": "Specimen ID",
"min": 1,
"max": "1",
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.tmb.specimen.type",
"path": "dnpm-lm-ngs-report.results.tmb.specimen.type",
"short": "Reference type",
"definition": "Reference type",
"min": 1,
"max": "1",
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.tmb.value",
"path": "dnpm-lm-ngs-report.results.tmb.value",
"short": "TMB quantity",
"definition": "TMB quantity",
"min": 1,
"max": "1",
"type": [
{
"code": "BackboneElement"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.tmb.value.value",
"path": "dnpm-lm-ngs-report.results.tmb.value.value",
"short": "Numeric TMB value",
"definition": "Numeric TMB value",
"min": 1,
"max": "1",
"type": [
{
"code": "decimal"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.tmb.value.unit",
"path": "dnpm-lm-ngs-report.results.tmb.value.unit",
"short": "Unit (e.g. Mutations per megabase)",
"definition": "Unit (e.g. Mutations per megabase)",
"min": 1,
"max": "1",
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.tmb.interpretation",
"path": "dnpm-lm-ngs-report.results.tmb.interpretation",
"short": "TMB interpretation",
"definition": "TMB interpretation",
"min": 0,
"max": "1",
"type": [
{
"code": "BackboneElement"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.tmb.interpretation.code",
"path": "dnpm-lm-ngs-report.results.tmb.interpretation.code",
"short": "Interpretation code (e.g. high)",
"definition": "Interpretation code (e.g. high)",
"min": 1,
"max": "1",
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.tmb.interpretation.display",
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"short": "Interpretation display",
"definition": "Interpretation display",
"min": 0,
"max": "1",
"type": [
{
"code": "string"
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]
},
{
"id": "dnpm-lm-ngs-report.results.tmb.interpretation.system",
"path": "dnpm-lm-ngs-report.results.tmb.interpretation.system",
"short": "Interpretation system URI",
"definition": "Interpretation system URI",
"min": 1,
"max": "1",
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.brcaness",
"path": "dnpm-lm-ngs-report.results.brcaness",
"short": "BRCAness score",
"definition": "BRCAness score",
"min": 0,
"max": "1",
"type": [
{
"code": "BackboneElement"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.brcaness.id",
"path": "dnpm-lm-ngs-report.results.brcaness.id",
"short": "BRCAness result ID",
"definition": "BRCAness result ID",
"min": 1,
"max": "1",
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.brcaness.patient",
"path": "dnpm-lm-ngs-report.results.brcaness.patient",
"short": "Patient reference",
"definition": "Patient reference",
"min": 1,
"max": "1",
"type": [
{
"code": "BackboneElement"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.brcaness.patient.id",
"path": "dnpm-lm-ngs-report.results.brcaness.patient.id",
"short": "Patient ID",
"definition": "Patient ID",
"min": 1,
"max": "1",
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.brcaness.patient.type",
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"short": "Reference type",
"definition": "Reference type",
"min": 1,
"max": "1",
"type": [
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"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.brcaness.specimen",
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"definition": "Specimen reference",
"min": 1,
"max": "1",
"type": [
{
"code": "BackboneElement"
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]
},
{
"id": "dnpm-lm-ngs-report.results.brcaness.specimen.id",
"path": "dnpm-lm-ngs-report.results.brcaness.specimen.id",
"short": "Specimen ID",
"definition": "Specimen ID",
"min": 1,
"max": "1",
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.brcaness.specimen.type",
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"short": "Reference type",
"definition": "Reference type",
"min": 1,
"max": "1",
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.brcaness.value",
"path": "dnpm-lm-ngs-report.results.brcaness.value",
"short": "BRCAness score (0.0 – 1.0)",
"definition": "BRCAness score (0.0 – 1.0)",
"min": 1,
"max": "1",
"type": [
{
"code": "decimal"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.brcaness.confidenceRange",
"path": "dnpm-lm-ngs-report.results.brcaness.confidenceRange",
"short": "Confidence range",
"definition": "Confidence range",
"min": 0,
"max": "1",
"type": [
{
"code": "BackboneElement"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.brcaness.confidenceRange.min",
"path": "dnpm-lm-ngs-report.results.brcaness.confidenceRange.min",
"short": "Minimum confidence value",
"definition": "Minimum confidence value",
"min": 1,
"max": "1",
"type": [
{
"code": "decimal"
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]
},
{
"id": "dnpm-lm-ngs-report.results.brcaness.confidenceRange.max",
"path": "dnpm-lm-ngs-report.results.brcaness.confidenceRange.max",
"short": "Maximum confidence value",
"definition": "Maximum confidence value",
"min": 1,
"max": "1",
"type": [
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"code": "decimal"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.hrdScore",
"path": "dnpm-lm-ngs-report.results.hrdScore",
"short": "Homologous Recombination Deficiency Score",
"definition": "Homologous Recombination Deficiency Score",
"min": 0,
"max": "1",
"type": [
{
"code": "BackboneElement"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.hrdScore.id",
"path": "dnpm-lm-ngs-report.results.hrdScore.id",
"short": "HRD result ID",
"definition": "HRD result ID",
"min": 1,
"max": "1",
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.hrdScore.patient",
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"short": "Patient reference",
"definition": "Patient reference",
"min": 1,
"max": "1",
"type": [
{
"code": "BackboneElement"
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]
},
{
"id": "dnpm-lm-ngs-report.results.hrdScore.patient.id",
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"short": "Patient ID",
"definition": "Patient ID",
"min": 1,
"max": "1",
"type": [
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"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.hrdScore.patient.type",
"path": "dnpm-lm-ngs-report.results.hrdScore.patient.type",
"short": "Reference type",
"definition": "Reference type",
"min": 1,
"max": "1",
"type": [
{
"code": "string"
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]
},
{
"id": "dnpm-lm-ngs-report.results.hrdScore.specimen",
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"definition": "Specimen reference",
"min": 1,
"max": "1",
"type": [
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"code": "BackboneElement"
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},
{
"id": "dnpm-lm-ngs-report.results.hrdScore.specimen.id",
"path": "dnpm-lm-ngs-report.results.hrdScore.specimen.id",
"short": "Specimen ID",
"definition": "Specimen ID",
"min": 1,
"max": "1",
"type": [
{
"code": "string"
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]
},
{
"id": "dnpm-lm-ngs-report.results.hrdScore.specimen.type",
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"definition": "Reference type",
"min": 1,
"max": "1",
"type": [
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"code": "string"
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]
},
{
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"id": "dnpm-lm-ngs-report.results.hrdScore.components.tai",
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"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.rnaFusions.effect.display",
"path": "dnpm-lm-ngs-report.results.rnaFusions.effect.display",
"short": "Effect display",
"definition": "Effect display",
"min": 0,
"max": "1",
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.rnaFusions.effect.system",
"path": "dnpm-lm-ngs-report.results.rnaFusions.effect.system",
"short": "Effect system URI",
"definition": "Effect system URI",
"min": 1,
"max": "1",
"type": [
{
"code": "string"
}
]
},
{
"id": "dnpm-lm-ngs-report.results.rnaFusions.reportedNumReads",
"path": "dnpm-lm-ngs-report.results.rnaFusions.reportedNumReads",
"short": "Number of reads supporting fusion",
"definition": "Number of reads supporting fusion",
"min": 0,
"max": "1",
"type": [
{
"code": "integer"
}
]
}
]
}
}