FHIRsmith: Observation/Observation-MII-EXA-MTB-DNA-Fusion-1.json

FHIR IG analytics

Package	de.medizininformatikinitiative.kerndatensatz.mtb
Resource Type	Observation
Id	Observation-MII-EXA-MTB-DNA-Fusion-1.json
FHIR Version	R4

Resources that use this resource

No resources found

Resources that this resource uses

No resources found

Narrative

Note: links and images are rebased to the (stated) source

English

Generated Narrative: Observation MII-EXA-MTB-DNA-Fusion-1

Profile: MII PR MTB DNA Fusion version: 2027.0.0-ballot.1

status: Final

category: Laboratory, Genetics

code: Genetic variant assessment

subject: Maxim Muster (no stated gender), DoB Unknown

component
code: Five Prime Chromosome
value: Chromosome 2

component
code: Three Prime Chromosome
value: Chromosome 5

component
code: Five Prime Position
value: 12345678-12345680

component
code: Three Prime Position
value: 87654321-87654323

component
code: Five Prime Gene
value: BRCA1

component
code: Three Prime Gene
value: RET

component
code: Allelic read depth
value: 150 Number of reported reads (Details: UCUM code1 = '1')

German

Generated Narrative: Observation MII-EXA-MTB-DNA-Fusion-1

Profile: MII PR MTB DNA Fusion version: 2027.0.0-ballot.1

status: Final

category: Laboratory, Genetik

code: Genetic variant assessment

subject: Maxim Muster (no stated gender), DoB Unknown

component
code: Five Prime Chromosome
value: Chromosome 2

component
code: Three Prime Chromosome
value: Chromosome 5

component
code: Five Prime Position
value: 12345678-12345680

component
code: Three Prime Position
value: 87654321-87654323

component
code: Five Prime Gene
value: BRCA1

component
code: Three Prime Gene
value: RET

component
code: Allelic read depth
value: 150 Number of reported reads (Details: UCUM code1 = '1')

Source1

{
  "resourceType": "Observation",
  "id": "MII-EXA-MTB-DNA-Fusion-1",
  "meta": {
    "profile": [
      "https://www.medizininformatik-initiative.de/fhir/ext/modul-mtb/StructureDefinition/mii-pr-mtb-dna-fusion|2027.0.0-ballot.1"
    ]
  },
  "text": {
    "status": "generated",
    "div": "<!-- snip (see above) -->"
  },
  "status": "final",
  "category": [
    {
      "coding": [
        {
          "system": "http://terminology.hl7.org/CodeSystem/observation-category",
          "code": "laboratory",
          "display": "Laboratory"
        }
      ]
    },
    {
      "coding": [
        {
          "system": "http://terminology.hl7.org/CodeSystem/v2-0074",
          "code": "GE"
        }
      ]
    }
  ],
  "code": {
    "coding": [
      {
        "system": "http://loinc.org",
        "code": "69548-6",
        "display": "Genetic variant assessment"
      }
    ]
  },
  "subject": {
    "reference": "Patient/mii-exa-mtb-patient"
  },
  "component": [
    {
      "code": {
        "coding": [
          {
            "system": "https://www.medizininformatik-initiative.de/fhir/ext/modul-mtb/CodeSystem/mii-cs-mtb-molekulare-biomarker",
            "code": "five-prime-chromosome"
          }
        ]
      },
      "valueCodeableConcept": {
        "coding": [
          {
            "system": "http://loinc.org",
            "code": "LA21255-7",
            "display": "Chromosome 2"
          }
        ]
      }
    },
    {
      "code": {
        "coding": [
          {
            "system": "https://www.medizininformatik-initiative.de/fhir/ext/modul-mtb/CodeSystem/mii-cs-mtb-molekulare-biomarker",
            "code": "three-prime-chromosome"
          }
        ]
      },
      "valueCodeableConcept": {
        "coding": [
          {
            "system": "http://loinc.org",
            "code": "LA21258-1",
            "display": "Chromosome 5"
          }
        ]
      }
    },
    {
      "code": {
        "coding": [
          {
            "system": "https://www.medizininformatik-initiative.de/fhir/ext/modul-mtb/CodeSystem/mii-cs-mtb-molekulare-biomarker",
            "code": "five-prime-position"
          }
        ]
      },
      "valueRange": {
        "low": {
          "value": 12345678
        },
        "high": {
          "value": 12345680
        }
      }
    },
    {
      "code": {
        "coding": [
          {
            "system": "https://www.medizininformatik-initiative.de/fhir/ext/modul-mtb/CodeSystem/mii-cs-mtb-molekulare-biomarker",
            "code": "three-prime-position"
          }
        ]
      },
      "valueRange": {
        "low": {
          "value": 87654321
        },
        "high": {
          "value": 87654323
        }
      }
    },
    {
      "code": {
        "coding": [
          {
            "system": "https://www.medizininformatik-initiative.de/fhir/ext/modul-mtb/CodeSystem/mii-cs-mtb-molekulare-biomarker",
            "code": "five-prime-gene"
          }
        ]
      },
      "valueCodeableConcept": {
        "coding": [
          {
            "code": "HGNC:1100",
            "display": "BRCA1"
          }
        ]
      }
    },
    {
      "code": {
        "coding": [
          {
            "system": "https://www.medizininformatik-initiative.de/fhir/ext/modul-mtb/CodeSystem/mii-cs-mtb-molekulare-biomarker",
            "code": "three-prime-gene"
          }
        ]
      },
      "valueCodeableConcept": {
        "coding": [
          {
            "code": "HGNC:9967",
            "display": "RET"
          }
        ]
      }
    },
    {
      "code": {
        "coding": [
          {
            "system": "http://loinc.org",
            "code": "82121-5"
          }
        ]
      },
      "valueQuantity": {
        "value": 150,
        "unit": "Number of reported reads",
        "system": "http://unitsofmeasure.org",
        "code": "1"
      }
    }
  ]
}