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Packagede.medizininformatikinitiative.kerndatensatz.biobank
Resource TypeSpecimen
IdSpecimen-AliquotBuffyCoat2.json
FHIR VersionR4

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Source1

{
  "resourceType": "Specimen",
  "id": "AliquotBuffyCoat2",
  "meta": {
    "profile": [
      "https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/Specimen"
    ]
  },
  "type": {
    "coding": [
      {
        "system": "http://snomed.info/sct",
        "code": "258587000",
        "display": "Buffy coat (specimen)"
      },
      {
        "system": "https://fhir.bbmri-eric.eu/fhir/CodeSystem/miabis-detailed-samply-type-cs",
        "code": "BuffyCoat",
        "display": "Buffy coat"
      }
    ]
  },
  "container": [
    {
      "capacity": {
        "system": "http://unitsofmeasure.org",
        "value": 0.5,
        "code": "ml",
        "unit": "ml"
      },
      "specimenQuantity": {
        "system": "http://unitsofmeasure.org",
        "value": 0.05,
        "code": "ml",
        "unit": "ml"
      },
      "type": {
        "coding": [
          {
            "code": "83059008",
            "system": "http://snomed.info/sct",
            "display": "Tube, device (physical object)"
          }
        ]
      }
    }
  ],
  "extension": [
    {
      "url": "https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/mii-ex-biobank-ebene",
      "valueCoding": {
        "code": "ALIQUOT",
        "system": "https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/CodeSystem/mii-cs-biobank-probenebene",
        "display": "Aliquot"
      }
    }
  ],
  "processing": [
    {
      "extension": [
        {
          "valueRange": {
            "low": {
              "system": "http://unitsofmeasure.org",
              "code": "Cel",
              "unit": "°C",
              "value": -196
            },
            "high": {
              "system": "http://unitsofmeasure.org",
              "code": "Cel",
              "unit": "°C",
              "value": -150
            }
          },
          "url": "https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/Temperaturbedingungen"
        },
        {
          "url": "https://fhir.bbmri-eric.eu/fhir/StructureDefinition/miabis-sample-storage-temperature-extension",
          "valueCodeableConcept": {
            "coding": [
              {
                "code": "LN",
                "system": "https://fhir.bbmri-eric.eu/fhir/CodeSystem/miabis-storage-temperature-cs"
              }
            ]
          }
        }
      ],
      "procedure": {
        "coding": [
          {
            "system": "http://snomed.info/sct",
            "code": "1186936003",
            "display": "Storage of specimen (procedure)"
          }
        ]
      },
      "timePeriod": {
        "start": "2018-06-07T17:07:00+01:00",
        "end": "2018-09-07T13:02:00+01:00"
      }
    },
    {
      "extension": [
        {
          "valueRange": {
            "low": {
              "system": "http://unitsofmeasure.org",
              "code": "Cel",
              "unit": "°C",
              "value": 15
            },
            "high": {
              "system": "http://unitsofmeasure.org",
              "code": "Cel",
              "unit": "°C",
              "value": 25
            }
          },
          "url": "https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/Temperaturbedingungen"
        },
        {
          "url": "https://fhir.bbmri-eric.eu/fhir/StructureDefinition/miabis-sample-storage-temperature-extension",
          "valueCodeableConcept": {
            "coding": [
              {
                "code": "RT",
                "system": "https://fhir.bbmri-eric.eu/fhir/CodeSystem/miabis-storage-temperature-cs"
              }
            ]
          }
        }
      ],
      "procedure": {
        "coding": [
          {
            "system": "http://snomed.info/sct",
            "code": "1186936003",
            "display": "Storage of specimen (procedure)"
          }
        ]
      },
      "timePeriod": {
        "start": "2018-09-07T13:02:00+01:00",
        "end": "2018-09-07T13:07:00+01:00"
      }
    },
    {
      "extension": [
        {
          "valueRange": {
            "low": {
              "system": "http://unitsofmeasure.org",
              "code": "Cel",
              "unit": "°C",
              "value": 15
            },
            "high": {
              "system": "http://unitsofmeasure.org",
              "code": "Cel",
              "unit": "°C",
              "value": 25
            }
          },
          "url": "https://www.medizininformatik-initiative.de/fhir/ext/modul-biobank/StructureDefinition/Temperaturbedingungen"
        },
        {
          "url": "https://fhir.bbmri-eric.eu/fhir/StructureDefinition/miabis-sample-storage-temperature-extension",
          "valueCodeableConcept": {
            "coding": [
              {
                "code": "RT",
                "system": "https://fhir.bbmri-eric.eu/fhir/CodeSystem/miabis-storage-temperature-cs"
              }
            ]
          }
        }
      ],
      "procedure": {
        "coding": [
          {
            "system": "http://snomed.info/sct",
            "code": "702943006",
            "display": "Deoxyribonucleic acid extraction technique (qualifier value)"
          }
        ]
      },
      "timePeriod": {
        "start": "2018-09-07T13:07:00+01:00",
        "end": "2018-09-07T13:37:00+01:00"
      }
    }
  ],
  "parent": [
    {
      "reference": "Specimen/AliquotgruppeBuffyCoat"
    }
  ],
  "identifier": [
    {
      "system": "https://biobank.uk-musterstadt.de/fhir/sid/proben",
      "value": "12345-BC-2"
    }
  ],
  "status": "unavailable",
  "subject": {
    "reference": "Patient/mii-exa-test-data-patient-1"
  },
  "collection": {
    "collectedDateTime": "2018-06-07T15:54:00+01:00"
  }
}