FHIR IG Statistics: ValueSet/ch-elm-expecting-organism-specification

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Resources that this resource uses

Narrative

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Source

{
  "resourceType": "ValueSet",
  "id": "ch-elm-expecting-organism-specification",
  "text": {
    "status": "generated",
    "div": "<!-- snip (see above) -->"
  },
  "url": "http://fhir.ch/ig/ch-elm/ValueSet/ch-elm-expecting-organism-specification",
  "version": "1.11.0-cibuild2",
  "name": "ChElmExpectingOrganismSpecification",
  "title": "CH ELM Expecting Organism Specification",
  "status": "active",
  "experimental": false,
  "date": "2025-08-12T10:48:44+00:00",
  "publisher": "Federal Office of Public Health FOPH",
  "contact": [
    {
      "name": "Federal Office of Public Health FOPH",
      "telecom": [
        {
          "system": "url",
          "value": "https://www.bag.admin.ch/bag/en/home/das-bag/kontakt-standort.html"
        }
      ]
    }
  ],
  "description": "This CH ELM value set includes the leading codes for the laboratory test results, which have to be completed by another code for the expecting organism.",
  "jurisdiction": [
    {
      "coding": [
        {
          "system": "urn:iso:std:iso:3166",
          "code": "CH"
        }
      ]
    }
  ],
  "copyright": "CC0-1.0",
  "compose": {
    "include": [
      {
        "system": "http://loinc.org",
        "concept": [
          {
            "code": "100911-7",
            "display": "Campylobacter sp [Presence] in Stool by Organism specific culture"
          },
          {
            "code": "101003-2",
            "display": "Monkeypox virus clade [Type] in Specimen by Sequencing"
          },
          {
            "code": "101219-4",
            "display": "Legionella sp DNA [Presence] in Specimen by NAA with probe detection"
          },
          {
            "code": "104376-9",
            "display": "Diphtheria toxin DNA [Presence] in Specimen by NAA with probe detection"
          },
          {
            "code": "14357-8",
            "display": "Microscopic observation [Identifier] in Cerebral spinal fluid by Gram stain"
          },
          {
            "code": "17563-8",
            "display": "Salmonella sp identified in Specimen by Organism specific culture"
          },
          {
            "code": "22826-2",
            "display": "Influenza virus A identified in Specimen by Bioassay"
          },
          {
            "code": "24102-6",
            "display": "Corynebacterium toxin [Presence] in Specimen by Immune diffusion (ID)"
          },
          {
            "code": "32781-7",
            "display": "Legionella sp Ag [Presence] in Urine"
          },
          {
            "code": "38353-9",
            "display": "Streptococcus sp identified in Specimen by Organism specific culture"
          },
          {
            "code": "39025-2",
            "display": "Influenza virus A hemagglutinin cDNA [Identifier] in Specimen by Sequencing"
          },
          {
            "code": "41625-5",
            "display": "Brucella sp DNA [Identifier] in Specimen by NAA with probe detection"
          },
          {
            "code": "43389-6",
            "display": "Streptococcus sp identified in Isolate by Organism specific culture"
          },
          {
            "code": "46454-5",
            "display": "Shigella sp [Presence] in Specimen by Organism specific culture"
          },
          {
            "code": "46732-4",
            "display": "Francisella tularensis subtype [Identifier] in Specimen by NAA with probe detection"
          },
          {
            "code": "47085-6",
            "display": "Plasmodium sp DNA [Presence] in Blood by NAA with probe detection"
          },
          {
            "code": "49612-5",
            "display": "Salmonella sp DNA [Presence] in Specimen by NAA with probe detection"
          },
          {
            "code": "50687-3",
            "display": "Plasmodium sp Ag [Presence] in Blood"
          },
          {
            "code": "50697-2",
            "display": "Influenza virus A Ag [Identifier] in Isolate"
          },
          {
            "code": "51587-4",
            "display": "Plasmodium sp [Presence] in Blood by Light microscopy"
          },
          {
            "code": "534-8",
            "display": "Mycobacterium sp identified in Cerebral spinal fluid by Organism specific culture"
          },
          {
            "code": "539-7",
            "display": "Mycobacterium sp identified in Sputum by Organism specific culture"
          },
          {
            "code": "540-5",
            "display": "Mycobacterium sp identified in Tissue by Organism specific culture"
          },
          {
            "code": "541-3",
            "display": "Mycobacterium sp identified in Urine by Organism specific culture"
          },
          {
            "code": "543-9",
            "display": "Mycobacterium sp identified in Specimen by Organism specific culture"
          },
          {
            "code": "552-0",
            "display": "Brucella sp identified in Specimen by Organism specific culture"
          },
          {
            "code": "58473-0",
            "display": "Haemophilus influenzae serotype DNA [Identifier] in Specimen by NAA with probe detection"
          },
          {
            "code": "589-2",
            "display": "Legionella sp identified in Bronchial specimen by Organism specific culture"
          },
          {
            "code": "590-0",
            "display": "Legionella sp identified in Sputum by Organism specific culture"
          },
          {
            "code": "593-4",
            "display": "Legionella sp identified in Specimen by Organism specific culture"
          },
          {
            "code": "59423-4",
            "display": "Influenza virus A hemagglutinin type RNA [Identifier] in Specimen by NAA with probe detection"
          },
          {
            "code": "60422-3",
            "display": "Measles virus genotype [Identifier] in Specimen by NAA with probe detection"
          },
          {
            "code": "65756-9",
            "display": "Salmonella sp serovar [Type] in Isolate"
          },
          {
            "code": "6578-9",
            "display": "Vibrio sp identified in Blood by Organism specific culture"
          },
          {
            "code": "6579-7",
            "display": "Vibrio sp identified in Stool by Organism specific culture"
          },
          {
            "code": "6581-3",
            "display": "Vibrio sp identified in Specimen by Organism specific culture"
          },
          {
            "code": "6584-7",
            "display": "Virus identified in Specimen by Culture"
          },
          {
            "code": "6600-1",
            "display": "Haemophilus sp identified in Specimen by Organism specific culture"
          },
          {
            "code": "6604-3",
            "display": "Influenza virus identified in Specimen by Organism specific culture"
          },
          {
            "code": "6609-2",
            "display": "Listeria sp identified in Specimen by Organism specific culture"
          },
          {
            "code": "70569-9",
            "display": "Plasmodium sp Ag [Identifier] in Blood by Rapid immunoassay"
          },
          {
            "code": "74037-3",
            "display": "Transmissible spongiform encephalopathy [Identifier] in Brain by Light microscopy"
          },
          {
            "code": "75756-7",
            "display": "Bacteria identified in Isolate by MS.MALDI-TOF"
          },
          {
            "code": "7899-8",
            "display": "Hantavirus RNA [Presence] in Serum by NAA with probe detection"
          },
          {
            "code": "82300-5",
            "display": "Shigella sp [Presence] in Stool by Culture"
          },
          {
            "code": "82301-3",
            "display": "Salmonella sp [Presence] in Stool by Culture"
          },
          {
            "code": "86520-4",
            "display": "Hantavirus RNA [Presence] in Blood by NAA with probe detection"
          },
          {
            "code": "88585-5",
            "display": "Legionella sp identified in Lower respiratory specimen by Organism specific culture"
          },
          {
            "code": "88588-9",
            "display": "Legionella sp DNA [Identifier] in Lower respiratory specimen by NAA with probe detection"
          },
          {
            "code": "90066-2",
            "display": "Corynebacterium sp identified in Isolate by Organism specific culture"
          },
          {
            "code": "92786-3",
            "display": "Corynebacterium sp DNA [Presence] by NAA with probe detection in Positive blood culture"
          },
          {
            "code": "93385-3",
            "display": "Salmonella sp DNA [Presence] by NAA with probe detection in Positive blood culture"
          },
          {
            "code": "97313-1",
            "display": "Salmonella sp DNA [Presence] in Stool by NAA with probe detection"
          },
          {
            "code": "97513-6",
            "display": "Campylobacter sp [Presence] in Specimen by Organism specific culture"
          },
          {
            "code": "9823-6",
            "display": "Mycobacterium sp identified in Bronchial specimen by Organism specific culture"
          }
        ]
      }
    ]
  }
}