| Package | agha.fhir.genclipr |
| Resource Type | ImplementationGuide |
| Id | agha.fhir.genclipr |
| FHIR Version | R4 |
| Source | https://simplifier.net/resolve?scope=agha.fhir.genclipr@0.1.0&canonical=http://aehrc.github.io/genclipr-fhir-ig/ImplementationGuide/agha.fhir.genclipr |
| URL | http://aehrc.github.io/genclipr-fhir-ig/ImplementationGuide/agha.fhir.genclipr |
| Version | 0.1.0 |
| Status | draft |
| Date | 2022-03-21T00:46:36+00:00 |
| Name | GenomicsClinicalPictureRepositoryIG |
| Title | Genomics Clinical Picture Repository Implementation Guide |
| Description | FHIR implementation guide for the Genomics Clinical Picture Repository standard developed as part of the Standardised Clinical Phenotypes project in Australian Genomics. |
| Copyright | [Australian Genomics](https://www.australiangenomics.org.au) |
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Note: links and images are rebased to the (stated) source
The official URL for this implementation guide is:
http://aehrc.github.io/genclipr-fhir-ig/ImplementationGuide/agha.fhir.genclipr
FHIR implementation guide for the Genomics Clinical Picture Repository standard developed as part of the Standardised Clinical Phenotypes project in Australian Genomics.
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"name": "Terminology: Value Sets",
"description": "These define sets of codes used by systems conforming to this implementation guide"
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{
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"description": "These define new code systems used by systems conforming to this implementation guide"
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"groupingId": "-str-profile"
},
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"reference": {
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},
"name": "Genomics Clinical Picture Repository Encounter",
"description": "An encounter stored in the repository.",
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{
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},
"name": "Genomics Clinical Picture Repository Research Study",
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{
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{
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}
],
"reference": {
"reference": "StructureDefinition/GencliprServiceRequest"
},
"name": "Genomics Clinical Picture Repository Service Request",
"description": "Captues information about the genomic testing requested for a patient.",
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"groupingId": "-str-profile"
},
{
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{
"url": "http://hl7.org/fhir/StructureDefinition/implementationguide-page",
"valueUri": "StructureDefinition-ImagingFinding.html"
}
],
"reference": {
"reference": "StructureDefinition/ImagingFinding"
},
"name": "Imaging Finding",
"description": "An observation based on the result of an imaging study.",
"exampleBoolean": false,
"groupingId": "-str-profile"
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/implementationguide-page",
"valueUri": "StructureDefinition-LaboratoryFinding.html"
}
],
"reference": {
"reference": "StructureDefinition/LaboratoryFinding"
},
"name": "Laboratory Finding",
"description": "An observation based on the result of a laboratory test.",
"exampleBoolean": false,
"groupingId": "-str-profile"
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/implementationguide-page",
"valueUri": "StructureDefinition-Sign.html"
}
],
"reference": {
"reference": "StructureDefinition/Sign"
},
"name": "Sign",
"description": "A sign is a bodily feature of a patient observed by a clinician which is deemed to be of clinical relevance. It records a phenotype that is clinically abnormal.",
"exampleBoolean": false,
"groupingId": "-str-profile"
},
{
"extension": [
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"valueUri": "StructureDefinition-Symptom.html"
}
],
"reference": {
"reference": "StructureDefinition/Symptom"
},
"name": "Symptom",
"description": "A symptom is an observation made by the patient and is hypothesized to be a realization of a disease.",
"exampleBoolean": false,
"groupingId": "-str-profile"
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/implementationguide-page",
"valueUri": "ValueSet-AbnormalClinicalFindings.html"
}
],
"reference": {
"reference": "ValueSet/AbnormalClinicalFindings"
},
"name": "Abnormal Clinical Findings Value Set",
"description": "Abnormal clinical findings.",
"exampleBoolean": false,
"groupingId": "-term-valueset"
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/implementationguide-page",
"valueUri": "ValueSet-BiologicalSexes.html"
}
],
"reference": {
"reference": "ValueSet/BiologicalSexes"
},
"name": "Biological Sexes Value Set",
"description": "SNOMED CT concepts for biological sex.",
"exampleBoolean": false,
"groupingId": "-term-valueset"
},
{
"extension": [
{
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"valueUri": "ValueSet-EncounterClasses.html"
}
],
"reference": {
"reference": "ValueSet/EncounterClasses"
},
"name": "Encounter Class Value Set",
"description": "Classes of encounters captured in a genomics clinical picture FHIR repository.",
"exampleBoolean": false,
"groupingId": "-term-valueset"
},
{
"extension": [
{
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"valueUri": "ValueSet-EncounterTypes.html"
}
],
"reference": {
"reference": "ValueSet/EncounterTypes"
},
"name": "Encounter Type Value Set",
"description": "Types of encounters captured in a genomics clinical picture FHIR repository.",
"exampleBoolean": false,
"groupingId": "-term-valueset"
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/implementationguide-page",
"valueUri": "ValueSet-GenomicTestTypes.html"
}
],
"reference": {
"reference": "ValueSet/GenomicTestTypes"
},
"name": "Genomic Test Types Value Set",
"description": "Genomic test types, including research tests.",
"exampleBoolean": false,
"groupingId": "-term-valueset"
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/implementationguide-page",
"valueUri": "ValueSet-Lateralities.html"
}
],
"reference": {
"reference": "ValueSet/Lateralities"
},
"name": "Lateralities Value Set",
"description": "Codes used to describe the laterality of a body structure.",
"exampleBoolean": false,
"groupingId": "-term-valueset"
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/implementationguide-page",
"valueUri": "ValueSet-PresenceValues.html"
}
],
"reference": {
"reference": "ValueSet/PresenceValues"
},
"name": "Presence Value Set",
"description": "Presence / absence values from SNOMED CT.",
"exampleBoolean": false,
"groupingId": "-term-valueset"
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/implementationguide-page",
"valueUri": "ValueSet-Severities.html"
}
],
"reference": {
"reference": "ValueSet/Severities"
},
"name": "Severity Value Set",
"description": "Codes used to describe the severity of a finding.",
"exampleBoolean": false,
"groupingId": "-term-valueset"
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/implementationguide-page",
"valueUri": "ValueSet-TestInterpretationValues.html"
}
],
"reference": {
"reference": "ValueSet/TestInterpretationValues"
},
"name": "Test Interpretation Value Set",
"description": "Test interpretation values from SNOMED CT.",
"exampleBoolean": false,
"groupingId": "-term-valueset"
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/implementationguide-page",
"valueUri": "CodeSystem-EncounterClass.html"
}
],
"reference": {
"reference": "CodeSystem/EncounterClass"
},
"name": "Encounter Class",
"description": "Class of encounters captured in a genomics clinical picture FHIR repository.",
"exampleBoolean": false,
"groupingId": "-term-codesystem"
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/implementationguide-page",
"valueUri": "CodeSystem-EncounterType.html"
}
],
"reference": {
"reference": "CodeSystem/EncounterType"
},
"name": "Encounter Type",
"description": "Type of encounters captured in a genomics clinical picture FHIR repository.",
"exampleBoolean": false,
"groupingId": "-term-codesystem"
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/implementationguide-page",
"valueUri": "CodeSystem-FindingType.html"
}
],
"reference": {
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},
"name": "Finding Type",
"description": "Extends the Observation Category codes to include additional categories.",
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},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/implementationguide-page",
"valueUri": "CodeSystem-GenomicTestType.html"
}
],
"reference": {
"reference": "CodeSystem/GenomicTestType"
},
"name": "Genomic Test Type",
"description": "Types of genomic tests not available in LOINC.",
"exampleBoolean": false,
"groupingId": "-term-codesystem"
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/implementationguide-page",
"valueUri": "CodeSystem-IdentifierType.html"
}
],
"reference": {
"reference": "CodeSystem/IdentifierType"
},
"name": "Identifier Type",
"description": "Types of identifiers used in a genomics clinical picture FHIR repository.",
"exampleBoolean": false,
"groupingId": "-term-codesystem"
},
{
"extension": [
{
"url": "http://hl7.org/fhir/StructureDefinition/implementationguide-page",
"valueUri": "CodeSystem-MitochondrialFindings.html"
}
],
"reference": {
"reference": "CodeSystem/MitochondrialFindings"
},
"name": "Mitochondrial Findings",
"description": "Mitochondrial-related findings that are not in HPO or SNOMED CT.",
"exampleBoolean": false,
"groupingId": "-term-codesystem"
}
],
"page": {
"nameUrl": "toc.html",
"title": "Table of Contents",
"generation": "html",
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"nameUrl": "index.html",
"title": "Overview",
"generation": "markdown"
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{
"nameUrl": "downloads.html",
"title": "Downloads",
"generation": "markdown"
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{
"nameUrl": "artifacts.html",
"title": "Artifacts Summary",
"generation": "html",
"page": [
{
"nameUrl": "StructureDefinition-BiologicalSex.html",
"title": "Biological Sex",
"generation": "generated"
},
{
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"title": "Deidentified Patient",
"generation": "generated"
},
{
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"title": "Examination Finding",
"generation": "generated"
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{
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"title": "Finding",
"generation": "generated"
},
{
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"title": "Genomics Clinical Picture Repository Encounter",
"generation": "generated"
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{
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"title": "Genomics Clinical Picture Repository Research Study",
"generation": "generated"
},
{
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"title": "Genomics Clinical Picture Repository Research Subject",
"generation": "generated"
},
{
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"title": "Genomics Clinical Picture Repository Service Request",
"generation": "generated"
},
{
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"title": "Imaging Finding",
"generation": "generated"
},
{
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"title": "Laboratory Finding",
"generation": "generated"
},
{
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"title": "Sign",
"generation": "generated"
},
{
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"title": "Symptom",
"generation": "generated"
},
{
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"title": "Abnormal Clinical Findings Value Set",
"generation": "generated"
},
{
"nameUrl": "ValueSet-BiologicalSexes.html",
"title": "Biological Sexes Value Set",
"generation": "generated"
},
{
"nameUrl": "ValueSet-EncounterClasses.html",
"title": "Encounter Class Value Set",
"generation": "generated"
},
{
"nameUrl": "ValueSet-EncounterTypes.html",
"title": "Encounter Type Value Set",
"generation": "generated"
},
{
"nameUrl": "ValueSet-GenomicTestTypes.html",
"title": "Genomic Test Types Value Set",
"generation": "generated"
},
{
"nameUrl": "ValueSet-Lateralities.html",
"title": "Lateralities Value Set",
"generation": "generated"
},
{
"nameUrl": "ValueSet-PresenceValues.html",
"title": "Presence Value Set",
"generation": "generated"
},
{
"nameUrl": "ValueSet-Severities.html",
"title": "Severity Value Set",
"generation": "generated"
},
{
"nameUrl": "ValueSet-TestInterpretationValues.html",
"title": "Test Interpretation Value Set",
"generation": "generated"
},
{
"nameUrl": "CodeSystem-EncounterClass.html",
"title": "Encounter Class",
"generation": "generated"
},
{
"nameUrl": "CodeSystem-EncounterType.html",
"title": "Encounter Type",
"generation": "generated"
},
{
"nameUrl": "CodeSystem-FindingType.html",
"title": "Finding Type",
"generation": "generated"
},
{
"nameUrl": "CodeSystem-GenomicTestType.html",
"title": "Genomic Test Type",
"generation": "generated"
},
{
"nameUrl": "CodeSystem-IdentifierType.html",
"title": "Identifier Type",
"generation": "generated"
},
{
"nameUrl": "CodeSystem-MitochondrialFindings.html",
"title": "Mitochondrial Findings",
"generation": "generated"
}
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}
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},
{
"code": "path-resource",
"value": "input/maps"
},
{
"code": "path-resource",
"value": "input/testing"
},
{
"code": "path-resource",
"value": "input/history"
},
{
"code": "path-resource",
"value": "fsh-generated/resources"
},
{
"code": "path-pages",
"value": "template/config"
},
{
"code": "path-pages",
"value": "input/images"
},
{
"code": "path-tx-cache",
"value": "input-cache/txcache"
}
]
}
}