Package | hl7.fhir.uv.phenomics-exchange |
Type | CodeSystem |
Id | Id |
FHIR Version | R4 |
Source | http://hl7.org/fhir/uv/phenomics-exchange/https://build.fhir.org/ig/HL7/phenomics-exchange-ig/CodeSystem-HtsFormat.html |
Url | http://hl7.org/fhir/uv/phenomics-exchange/CodeSystem/HtsFormat |
Version | 0.1.0 |
Status | draft |
Date | 2020-02-14T16:13:10+10:00 |
Name | HtsFormat |
Title | HTS Format |
Experimental | False |
Realm | uv |
Authority | hl7 |
Description | An enumeration used to represent different high-throughput sequencing file formats. |
Copyright | [Global Alliance for Genomics and Health](https://www.ga4gh.org) |
Content | complete |
No resources found
No resources found
Note: links and images are rebased to the (stated) source
This case-sensitive code system http://hl7.org/fhir/uv/phenomics-exchange/CodeSystem/HtsFormat
defines the following codes:
Code | Display |
UNKNOWN | Unknown |
SAM | SAM |
BAM | BAM |
CRAM | CRAM |
VCF | VCF |
BCF | BCF |
GVCF | GVCF |
{
"resourceType" : "CodeSystem",
"id" : "HtsFormat",
"meta" : {
"profile" : [
"http://hl7.org/fhir/StructureDefinition/shareablecodesystem"
]
},
"text" : {
"status" : "generated",
"div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p>This case-sensitive code system <code>http://hl7.org/fhir/uv/phenomics-exchange/CodeSystem/HtsFormat</code> defines the following codes:</p><table class=\"codes\"><tr><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td></tr><tr><td style=\"white-space:nowrap\">UNKNOWN<a name=\"HtsFormat-UNKNOWN\"> </a></td><td>Unknown</td></tr><tr><td style=\"white-space:nowrap\">SAM<a name=\"HtsFormat-SAM\"> </a></td><td>SAM</td></tr><tr><td style=\"white-space:nowrap\">BAM<a name=\"HtsFormat-BAM\"> </a></td><td>BAM</td></tr><tr><td style=\"white-space:nowrap\">CRAM<a name=\"HtsFormat-CRAM\"> </a></td><td>CRAM</td></tr><tr><td style=\"white-space:nowrap\">VCF<a name=\"HtsFormat-VCF\"> </a></td><td>VCF</td></tr><tr><td style=\"white-space:nowrap\">BCF<a name=\"HtsFormat-BCF\"> </a></td><td>BCF</td></tr><tr><td style=\"white-space:nowrap\">GVCF<a name=\"HtsFormat-GVCF\"> </a></td><td>GVCF</td></tr></table></div>"
},
"extension" : [
{
"url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg",
"valueCode" : "cic"
}
],
"url" : "http://hl7.org/fhir/uv/phenomics-exchange/CodeSystem/HtsFormat",
"version" : "0.1.0",
"name" : "HtsFormat",
"title" : "HTS Format",
"status" : "draft",
"experimental" : false,
"date" : "2020-02-14T16:13:10+10:00",
"publisher" : "HL7 International / Clinical Interoperability Council",
"contact" : [
{
"name" : "HL7 International / Clinical Interoperability Council",
"telecom" : [
{
"system" : "url",
"value" : "http://www.hl7.org/Special/committees/cic"
},
{
"system" : "email",
"value" : "cic@lists.HL7.org"
}
]
}
],
"description" : "An enumeration used to represent different high-throughput sequencing file formats.",
"jurisdiction" : [
{
"coding" : [
{
"system" : "http://unstats.un.org/unsd/methods/m49/m49.htm",
"code" : "001",
"display" : "World"
}
]
}
],
"copyright" : "[Global Alliance for Genomics and Health](https://www.ga4gh.org)",
"caseSensitive" : true,
"content" : "complete",
"count" : 7,
"concept" : [
{
"code" : "UNKNOWN",
"display" : "Unknown"
},
{
"code" : "SAM",
"display" : "SAM"
},
{
"code" : "BAM",
"display" : "BAM"
},
{
"code" : "CRAM",
"display" : "CRAM"
},
{
"code" : "VCF",
"display" : "VCF"
},
{
"code" : "BCF",
"display" : "BCF"
},
{
"code" : "GVCF",
"display" : "GVCF"
}
]
}
XIG built as of ??metadata-date??. Found ??metadata-resources?? resources in ??metadata-packages?? packages.