Package | hl7.fhir.uv.genomics-reporting |
Type | CodeSystem |
Id | Id |
FHIR Version | R4 |
Source | http://hl7.org/fhir/uv/genomics-reporting/https://build.fhir.org/ig/HL7/genomics-reporting/CodeSystem-variant-confidence-status-cs.html |
Url | http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/variant-confidence-status-cs |
Version | 3.0.1-SNAPSHOT |
Status | active |
Date | 2024-10-08T22:32:57+00:00 |
Name | VariantConfidenceStatusCS |
Title | Variant Confidence Status Codes |
Experimental | True |
Realm | uv |
Authority | hl7 |
Description | A code that represents the confidence of a true positive variant call. |
Content | complete |
ValueSet | |
variant-confidence-status-vs | Variant Confidence Status |
No resources found
Note: links and images are rebased to the (stated) source
Generated Narrative: CodeSystem variant-confidence-status-cs
This case-sensitive code system http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/variant-confidence-status-cs
defines the following codes:
{
"resourceType" : "CodeSystem",
"id" : "variant-confidence-status-cs",
"text" : {
"status" : "generated",
"div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: CodeSystem variant-confidence-status-cs</b></p><a name=\"variant-confidence-status-cs\"> </a><a name=\"hcvariant-confidence-status-cs\"> </a><a name=\"variant-confidence-status-cs-en-US\"> </a><p>This case-sensitive code system <code>http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/variant-confidence-status-cs</code> defines the following codes:</p><table class=\"codes\"><tr><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td><td><b>Definition</b></td></tr><tr><td style=\"white-space:nowrap\">high<a name=\"variant-confidence-status-cs-high\"> </a></td><td>High</td><td>High confidence true positive variant call. Suitable for clinical reporting.</td></tr><tr><td style=\"white-space:nowrap\">intermediate<a name=\"variant-confidence-status-cs-intermediate\"> </a></td><td>Intermediate</td><td>Candidate true positive variant call. Unable to confirm without additional testing.</td></tr><tr><td style=\"white-space:nowrap\">low<a name=\"variant-confidence-status-cs-low\"> </a></td><td>Low</td><td>High confidence false positive variant call.</td></tr></table></div>"
},
"extension" : [
{
"url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg",
"valueCode" : "cg"
}
],
"url" : "http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/variant-confidence-status-cs",
"version" : "3.0.1-SNAPSHOT",
"name" : "VariantConfidenceStatusCS",
"title" : "Variant Confidence Status Codes",
"status" : "active",
"experimental" : true,
"date" : "2024-10-08T22:32:57+00:00",
"publisher" : "HL7 International / Clinical Genomics",
"contact" : [
{
"name" : "HL7 International / Clinical Genomics",
"telecom" : [
{
"system" : "url",
"value" : "http://www.hl7.org/Special/committees/clingenomics"
},
{
"system" : "email",
"value" : "cg@lists.HL7.org"
}
]
}
],
"description" : "A code that represents the confidence of a true positive variant call.",
"jurisdiction" : [
{
"coding" : [
{
"system" : "http://unstats.un.org/unsd/methods/m49/m49.htm",
"code" : "001",
"display" : "World"
}
]
}
],
"caseSensitive" : true,
"content" : "complete",
"count" : 3,
"concept" : [
{
"code" : "high",
"display" : "High",
"definition" : "High confidence true positive variant call. Suitable for clinical reporting."
},
{
"code" : "intermediate",
"display" : "Intermediate",
"definition" : "Candidate true positive variant call. Unable to confirm without additional testing."
},
{
"code" : "low",
"display" : "Low",
"definition" : "High confidence false positive variant call."
}
]
}
XIG built as of ??metadata-date??. Found ??metadata-resources?? resources in ??metadata-packages?? packages.