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Source1

{
  "resourceType": "CodeSystem",
  "id": "microbiology-cs",
  "text": {
    "status": "generated",
    "div": "<!-- snip (see above) -->"
  },
  "url": "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/microbiology-cs",
  "version": "0.1.0-ci-build",
  "name": "MicrobiologyCS",
  "title": "Microbiology component codes",
  "status": "draft",
  "experimental": true,
  "date": "2026-08-11T12:50:29+00:00",
  "publisher": "Protect Child",
  "contact": [
    {
      "name": "Protect Child",
      "telecom": [
        {
          "system": "url",
          "value": "https://protect-child.eu/"
        }
      ]
    }
  ],
  "description": "Local codes for microbiology panel Observation components.",
  "caseSensitive": false,
  "content": "complete",
  "count": 33,
  "concept": [
    {
      "code": "microbiology-panel",
      "display": "Microbiology studies panel",
      "definition": "Panel grouping microbiology and virology results for a visit."
    },
    {
      "code": "ebv-dna",
      "display": "EBV-DNA (quantitative)",
      "definition": "Epstein-Barr virus DNA detected/quantified by PCR."
    },
    {
      "code": "ebv-igm-anti-ea",
      "display": "EBV IgM anti-EA",
      "definition": "EBV IgM antibody to early antigen (EA)."
    },
    {
      "code": "ebv-igm-anti-vca",
      "display": "EBV IgM anti-VCA",
      "definition": "EBV IgM antibody to viral capsid antigen (VCA)."
    },
    {
      "code": "ebv-igg-anti-vca",
      "display": "EBV IgG anti-VCA",
      "definition": "EBV IgG antibody to viral capsid antigen (VCA)."
    },
    {
      "code": "ebv-igg-ebna",
      "display": "EBV IgG EBNA",
      "definition": "EBV IgG antibody to Epstein-Barr nuclear antigen (EBNA)."
    },
    {
      "code": "cmv-dna",
      "display": "CMV-DNA",
      "definition": "Cytomegalovirus DNA detected/quantified by PCR."
    },
    {
      "code": "cmv-igm",
      "display": "CMV IgM",
      "definition": "Cytomegalovirus IgM antibody."
    },
    {
      "code": "cmv-igg",
      "display": "CMV IgG",
      "definition": "Cytomegalovirus IgG antibody."
    },
    {
      "code": "parvovirus-b19-dna",
      "display": "Parvovirus B19 DNA",
      "definition": "Parvovirus B19 DNA detected by PCR."
    },
    {
      "code": "parvovirus-b19-igg",
      "display": "Parvovirus B19 IgG",
      "definition": "Parvovirus B19 IgG antibody."
    },
    {
      "code": "parvovirus-b19-igm",
      "display": "Parvovirus B19 IgM",
      "definition": "Parvovirus B19 IgM antibody."
    },
    {
      "code": "hsv-igg",
      "display": "HSV IgG",
      "definition": "Herpes simplex virus IgG antibody."
    },
    {
      "code": "hsv-igm",
      "display": "HSV IgM",
      "definition": "Herpes simplex virus IgM antibody."
    },
    {
      "code": "adenovirus-igg",
      "display": "Adenovirus IgG",
      "definition": "Adenovirus IgG antibody."
    },
    {
      "code": "adenovirus-igm",
      "display": "Adenovirus IgM",
      "definition": "Adenovirus IgM antibody."
    },
    {
      "code": "vzv-igg",
      "display": "VZV IgG",
      "definition": "Varicella-zoster virus IgG antibody."
    },
    {
      "code": "vzv-igm",
      "display": "VZV IgM",
      "definition": "Varicella-zoster virus IgM antibody."
    },
    {
      "code": "blood-bkv-dna",
      "display": "Blood BKV-DNA",
      "definition": "BK polyomavirus DNA in blood by PCR."
    },
    {
      "code": "urine-bkv-dna",
      "display": "Urine BKV-DNA",
      "definition": "BK polyomavirus DNA in urine by PCR."
    },
    {
      "code": "bkv-dna-kidney-biopsy",
      "display": "BKV-DNA on kidney biopsy",
      "definition": "BK polyomavirus DNA detected in kidney biopsy tissue."
    },
    {
      "code": "bkv-fish-kidney-biopsy",
      "display": "BKV FISH on kidney biopsy",
      "definition": "BK polyomavirus detected by FISH in kidney biopsy tissue."
    },
    {
      "code": "ebv-dna-copies",
      "display": "EBV-DNA copies/ml",
      "definition": "Quantitative EBV DNA viral load (copies/mL)."
    },
    {
      "code": "cmv-dna-copies",
      "display": "CMV-DNA copies/ml",
      "definition": "Quantitative CMV DNA viral load (copies/mL)."
    },
    {
      "code": "parvovirus-b19-dna-copies",
      "display": "Parvovirus B19 DNA copies/ml",
      "definition": "Quantitative parvovirus B19 DNA viral load (copies/mL)."
    },
    {
      "code": "blood-adenovirus-dna",
      "display": "Blood Adenovirus DNA",
      "definition": "Adenovirus DNA in blood by PCR."
    },
    {
      "code": "blood-adenovirus-dna-copies",
      "display": "Blood Adenovirus DNA copies/ml",
      "definition": "Quantitative blood adenovirus DNA viral load (copies/mL)."
    },
    {
      "code": "blood-bkv-dna-copies",
      "display": "Blood BKV-DNA copies/ml",
      "definition": "Quantitative blood BK virus DNA viral load (copies/mL)."
    },
    {
      "code": "blood-colture",
      "display": "Blood culture",
      "definition": "Blood culture for microbial growth."
    },
    {
      "code": "urine-colture",
      "display": "Urine culture",
      "definition": "Urine culture for microbial growth."
    },
    {
      "code": "other-positivity",
      "display": "Other positivity",
      "definition": "Other microbiological positivity not otherwise specified."
    },
    {
      "code": "ebv-hepatitis-liver",
      "display": "EBV Hepatitis on liver",
      "definition": "EBV-associated hepatitis involving the liver allograft."
    },
    {
      "code": "evidence-bkvan",
      "display": "Histological evidence of BKVAN",
      "definition": "Histological evidence of BK virus-associated nephropathy (BKVAN)."
    }
  ]
}